RNA id: TU23960


Basic Information

Item Value
RNA id TU23960
length 267
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G16124
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1417894 ~ 1480682 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtctcagtcAGTAATTATGAGCTCGTCACAGCCCCAGTCCTCATAACTCCCATCAGGCAGATACCGGCGGATGATGATGGGGATCTTCCTGCTCCTGATCAACAAACAATACAAGATTAAAACAAAGTGCTTCTATCCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23909 lncRNA downstream 86712 1255055 ~ 1331182 (-) False G16084
TU23906 lncRNA downstream 86712 1328179 ~ 1331182 (-) True G16084
TU23927 lncRNA downstream 89903 1326319 ~ 1327991 (-) True G16100
TU23920 lncRNA downstream 126273 1290881 ~ 1291621 (-) True G16094
XR_006248069.1 lncRNA downstream 143694 1273288 ~ 1274200 (-) True LOC122330712
TU24015 lncRNA upstream 76720 1557402 ~ 1557841 (-) True G16159
TU24024 lncRNA upstream 84511 1565193 ~ 1578960 (-) True G16161
XR_006248054.1 lncRNA upstream 106159 1586841 ~ 1588429 (-) True LOC122330691
TU24034 lncRNA upstream 136566 1617248 ~ 1647616 (-) True G16170
TU24037 lncRNA upstream 139225 1619907 ~ 1865318 (-) True G16171
XM_043227168.1 mRNA downstream 34753 1380918 ~ 1383141 (-) False LOC122330283
XM_043227185.1 mRNA downstream 34753 1380918 ~ 1383141 (-) False LOC122330283
XM_043227176.1 mRNA downstream 34753 1380918 ~ 1383141 (-) True LOC122330283
XM_043227194.1 mRNA downstream 35236 1380918 ~ 1382658 (-) False LOC122330283
XM_043227203.1 mRNA downstream 35464 1380918 ~ 1382430 (-) False LOC122330283
XM_043227830.1 mRNA upstream 3303 1483985 ~ 1491750 (-) True LOC122330636
XM_043226083.1 mRNA upstream 11861 1492543 ~ 1507468 (-) True tnrc6bb.1
XM_043226172.1 mRNA upstream 49730 1530412 ~ 1538308 (-) True LOC122329710
XM_043226343.1 mRNA upstream 58009 1538691 ~ 1550787 (-) False zmp:0000000896
XM_043226333.1 mRNA upstream 58009 1538691 ~ 1550787 (-) True zmp:0000000896
XR_006248017.1 other downstream 234306 1164316 ~ 1183588 (-) False LOC122330455
TU23864 other downstream 265134 1147589 ~ 1152760 (-) True G16054
TU23858 other downstream 272377 1143803 ~ 1145517 (-) False LOC122329780
TU23851 other downstream 303192 1109491 ~ 1114702 (-) True G16048
TU23471 other downstream 518604 897601 ~ 899290 (-) False LOC122332393
TU24042 other upstream 140282 1620964 ~ 1652366 (-) True G16172
TU24079 other upstream 307563 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other upstream 307563 1788245 ~ 2000140 (-) False zc3h7ba
TU24084 other upstream 307563 1788245 ~ 2000329 (-) False zc3h7ba
TU24091 other upstream 366441 1847123 ~ 1850109 (-) False LOC122333107

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU387995 False 325 lncRNA 0.42 2 NW_019172511.1 57160 ~ 128773 (+)