RNA id: TU23909


Basic Information

Item Value
RNA id TU23909
length 1214
lncRNA type read_through
GC content 0.46
exon number 3
gene id G16084
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1255055 ~ 1331182 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATCTGAAGGAAACGGTCGAGGAGGGGATGGAGGCAAAGGCCAGTCGTTTAATAAGAGCTCGACACACACCACAGCAACACAACACGTTATATCAGCACTGCGGCCATCTGAAATCACGAAGAGAGCCTCGTTTTAAGACGGCCGTCGAACTACTTCCATTCTCATCAGAGCGTCCATCTTCTCACCGGAACACGGGCCGCTCTCCCGAAACGAAAGTAAACGGCGCAGAAACGAAAGCCACCACAAGAGGAAGCAGTCCCGACCAGAAGAGACAGAACATACAGAAATgatatttcaaagaaatagCAAGGACACCTGAAAGAGTCAGCTGGAGTAAGGATGCTGAAAATCAGCGCCAAAGACACAGGAgtacattacatttgaaaatatatccaGGAACATTTTTCGCTATTTGTCTACAAACTATGAAGAATAAAACAGATTAAACGAAAGCCAGGTTATCTGAGGAAGCTTCACGCAGCTGCTTTCAAACATCCGTGTCTCATTTACTCCAGAAAAAACATTCAAGgctgaaaagaagaagaaacagcGCTATTTACTACGGTAAAGTTCTCCATCCGGAGTGAAGATGTTTAAGGCATTCGCTTTATCATCGAGATGCTTCGTGTACATGATTCCTAACGTGACCCTGACATACAGCCATCGTTCCCCATCCCCTACAGCCGATGACCCCTCAGTAGTGAGCTCTACGCTCTCCACGGAGCTCCAGGGACCTTCAAACCAAACCATATTTCTGAAGAGTATCTGACGCAAACAGTTGATTTTAAACGCGCAGAAAAAGCAGCGAGGGCCCGTGTTTAGCTGCATACTAAACATTATAACGAGAGCCACACGGAGTTGGTTTTAAgtgcatttcttaaaatgatGAACGTTGGTGAGCCTCAGGCCTATTAACTAAAAGCACTGGGTGTTTTGATGCCGACTAGAGTGTGATACTAATACGTTCTGCTAATGTTCTCCTTAAAGCCACGTTAAATGTCCTGAACGCCTAGTTTTGAAAGAGAGATGCGGGAGATTCCGTTCCATCGCCGCGGCAACCCTGGGAACGCTACTTTGGAACACTCCGGGAACGTTCCGATCGGAAAAAGCTTCCGAGTTACATGAGAAGAAACATTACTGGAGGAGCGTTCCAGAACGTTCTCACGCTctctgtagtcaattcaacgatagtcactagaagttaagtgtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23875 lncRNA downstream 33095 1219664 ~ 1221960 (-) True G16064
TU23886 lncRNA downstream 100475 1154300 ~ 1154580 (-) True G16073
XR_006248072.1 lncRNA downstream 140750 1111882 ~ 1114305 (-) True LOC122330728
TU23608 lncRNA downstream 160326 1092500 ~ 1094729 (-) True G15875
TU23589 lncRNA downstream 170245 1083440 ~ 1084810 (-) True G15866
TU23960 lncRNA upstream 86712 1417894 ~ 1480682 (-) False G16124
TU23961 lncRNA upstream 86712 1417894 ~ 1418329 (-) False G16124
TU23962 lncRNA upstream 86712 1417894 ~ 1418329 (-) True G16124
TU23963 lncRNA upstream 86712 1417894 ~ 1480447 (-) False G16124
TU23964 lncRNA upstream 86712 1417894 ~ 1480447 (-) False G16124
XM_043227526.1 mRNA downstream 5820 1247022 ~ 1249235 (-) True LOC122330477
XM_043227516.1 mRNA downstream 6119 1247022 ~ 1248936 (-) False LOC122330477
XM_043227758.1 mRNA downstream 25215 1227203 ~ 1229840 (-) True LOC122330600
XM_043227478.1 mRNA downstream 71467 1179345 ~ 1183588 (-) True LOC122330455
XM_043230004.1 mRNA downstream 102293 1149958 ~ 1152762 (-) True LOC122332636
XM_043226635.1 mRNA upstream 21908 1353090 ~ 1360764 (-) True LOC122329932
XM_043227168.1 mRNA upstream 49736 1380918 ~ 1383141 (-) False LOC122330283
XM_043227185.1 mRNA upstream 49736 1380918 ~ 1383141 (-) False LOC122330283
XM_043227176.1 mRNA upstream 49736 1380918 ~ 1383141 (-) True LOC122330283
XM_043227194.1 mRNA upstream 49736 1380918 ~ 1382658 (-) False LOC122330283
XR_006248017.1 other downstream 71467 1164316 ~ 1183588 (-) False LOC122330455
TU23864 other downstream 102295 1147589 ~ 1152760 (-) True G16054
TU23858 other downstream 109538 1143803 ~ 1145517 (-) False LOC122329780
TU23851 other downstream 140353 1109491 ~ 1114702 (-) True G16048
TU23471 other downstream 355765 897601 ~ 899290 (-) False LOC122332393
TU24042 other upstream 289782 1620964 ~ 1652366 (-) True G16172
TU24079 other upstream 457063 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other upstream 457063 1788245 ~ 2000140 (-) False zc3h7ba
TU24084 other upstream 457063 1788245 ~ 2000329 (-) False zc3h7ba
TU24091 other upstream 515941 1847123 ~ 1850109 (-) False LOC122333107

Expression Profile