RNA id: XM_043227758.1


Basic Information

Item Value
RNA id XM_043227758.1
length 876
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC122330600
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1227203 ~ 1229840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCCACGGACCCTAAAAACCGCGGCACGCCGGAAGTTGGTTCCATGCTTCGCCTCGTCTGGTGTCCGAGGCGCCACAACAACGGAGTTTTCTGCGAAATCGTTACTTAAATCGTTCTTACGACGCGCTAGACAATAACAATGTCTGACAACGAAGACAATTTCGATGACGGAGATTTCGATGATGTTGAGGATGAAGAGCCTCTGGATGACCTGGAGAACGTGGAAGATgaggACCAGGAGAACGTCCAGATCCTGCCGGCGGGTGAAGGACagcaggccaatcagaagagaatCACTACTCCTTACATGACTAAGTACGAGCGTGCGCGGGTGCTGGGAACACGAGCGCTGCAGATCGCGATGTGTGCGCCGGTGATGGTGGAGCTGGAAGGAGAGACGGATCCGCTGCAGATCGCCATGAAAGAGCTCAAGAGCAGGAAGATCCCCATCATCATCCGCCGGTATCTGCCTGATGGGAGTTATGAGGACTGGGGCTGTGACGAGCTCATAATTACTgactgagacacacactcacacacacacacacacacacacacactcacactcacacacacacactcacactcacacacacacacacagatctctaGAGCTTTGTTTCATCCAGTAGTTCATGTGTTTGTCCGCAGGAGGGCAGCAGAAACACAGCACAAACTTCTTCACTcagtttcattatttaatgttcatttctttgttttatccATGCgatattaaaactgttttttgtaGAAAGGTATATGCTGTGCTCTTTTCTCCTTATTGTTGTGAAACGATGTGAAGGATAAATCTGTTGATTACAACAAAATAAGATGTTCGTTACAATCATTTATAAAAACGGagttaaaatgtcaaa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03014 RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23875 lncRNA downstream 5243 1219664 ~ 1221960 (-) True G16064
TU23886 lncRNA downstream 72623 1154300 ~ 1154580 (-) True G16073
XR_006248072.1 lncRNA downstream 112898 1111882 ~ 1114305 (-) True LOC122330728
TU23608 lncRNA downstream 132474 1092500 ~ 1094729 (-) True G15875
TU23589 lncRNA downstream 142393 1083440 ~ 1084810 (-) True G15866
TU23909 lncRNA upstream 25215 1255055 ~ 1331182 (-) False G16084
XR_006248069.1 lncRNA upstream 43448 1273288 ~ 1274200 (-) True LOC122330712
TU23920 lncRNA upstream 61041 1290881 ~ 1291621 (-) True G16094
TU23927 lncRNA upstream 96479 1326319 ~ 1327991 (-) True G16100
TU23906 lncRNA upstream 98339 1328179 ~ 1331182 (-) True G16084
XM_043227478.1 mRNA downstream 43615 1179345 ~ 1183588 (-) True LOC122330455
XM_043230004.1 mRNA downstream 74441 1149958 ~ 1152762 (-) True LOC122332636
XM_043226361.1 mRNA downstream 77310 1134810 ~ 1149893 (-) False LOC122329780
XM_043226353.1 mRNA downstream 77310 1134810 ~ 1149893 (-) True LOC122329780
XM_043227266.1 mRNA downstream 93644 1128574 ~ 1133559 (-) False ccdc134
XM_043227526.1 mRNA upstream 17182 1247022 ~ 1249235 (-) True LOC122330477
XM_043227516.1 mRNA upstream 17182 1247022 ~ 1248936 (-) False LOC122330477
XM_043227375.1 mRNA upstream 23827 1253667 ~ 1257147 (-) False LOC122330412
XM_043227376.1 mRNA upstream 23827 1253667 ~ 1257147 (-) True LOC122330412
XM_043230060.1 mRNA upstream 32274 1262114 ~ 1263426 (-) True LOC122332678
XR_006248017.1 other downstream 43615 1164316 ~ 1183588 (-) False LOC122330455
TU23864 other downstream 74443 1147589 ~ 1152760 (-) True G16054
TU23858 other downstream 81686 1143803 ~ 1145517 (-) False LOC122329780
TU23851 other downstream 112501 1109491 ~ 1114702 (-) True G16048
TU23471 other downstream 327913 897601 ~ 899290 (-) False LOC122332393
TU24042 other upstream 391124 1620964 ~ 1652366 (-) True G16172
TU24079 other upstream 558405 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other upstream 558405 1788245 ~ 2000140 (-) False zc3h7ba
TU24084 other upstream 558405 1788245 ~ 2000329 (-) False zc3h7ba
TU24091 other upstream 617283 1847123 ~ 1850109 (-) False LOC122333107

Expression Profile