RNA id: XM_043227375.1


Basic Information

Item Value
RNA id XM_043227375.1
length 1918
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC122330412
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1253667 ~ 1257147 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttaataataatcatgcatttaaatgtattaatggtAATGGTTCGTGTTATAAAGTGAAAATACTCTCacagcaaatgaaaacaagGGTTTACGGTAGGGGCCAGAATTCTCTGTAAAATAGGTTCTCCTGCGTGAATGTGTGgtctaaaaaaatgacaaaaacgaAGACGATGATTTCATCCAAACCGATTTAGCCTGCTTGCATGTTTCTGTAGTACATCTTCATCACGCTTCAGATTGTTTCTGATCTTCAGCTGGGTTTTGAACAACCTTTCCCTTCAAACAATAACTTCCCTGGATAACCGTCCCTGGATTTAGGTTTGTGTCGTCCTCGCTGCTATATTCATTCATGCGTCTTCACGAATCGTTATTTTGAAATcatgacaaaatatttcacGGTCTGCTTCGACTTTATCTTTTTGGATCCTGGAAATTTCCACCGAGCTCTTTCCTCCTGTGGGCGGAGCTGATGGAGAGCACATAAATCATCTGAAACTGAAACTATCCTTTAAACAGAGAGTCTGAAGATCAGCATCAAGGAAGAACAGGTCGACCGAGGACTATGGCCGAGAACCTGCGTCACAGATGTAACGATGCGGCTAAAGCTTATATTAACCAGAGAAACTCACATGACTGGACCGCATGCGAAGCAGCACCTGACAGTGGCATTAACATCGTCCTCCTGGGGAAAACCGGAGTCGGGAAAAGCTCGTCAGGAAACACCATCCTGGGGCAGAACATATTCCCGTGTGGAAGAAGTCTGTCTGCTGTTACTAGTGCATCCAGCATCCAGAAAGCAGTGGTTGACGGCAGATCTGTGTCTGTTATAGACACTCCTGGGTTCTTCTGCACTAATCTTTCCCAGGAGCAGCTGGCGTGGGAGTTTGCGAGAAGCGTGTTTCTCGCCGCTCCGGGCGTCCATGTCTTTTTATTCGTTGTGCCGTTCGGCAGGTTCACGGAGCAGGAGGAAGACATACTCAACAAAGTGCAGAAGGTCTACGGTAAAGACGTGCTGAAGCATGTTATTCTCCTCTTCACGTACGGGGATGAGTGCATCAGTGAGAAGATGCGGGCAGAGATCGGTGGGAATGAAGTCGTCAGTAGAGTTGTTAGGAGCTGTCAGGGTTATCACGTCCTCGATAACAAAGACCTGACCAACAGACGGCAGGTCACTGATCTACTGCAGAAGATCAACGGCGTGGTCGAGAGGAACCAGGGCTACTACACCAATGAGATGTATAAATGGGCACAAATGACCACGCTGGAAAAATTCTGGATAAGATTTAAGGATTTTTTCGAAGCTGTAATTGCCTTTTTCCTGAACCAGGCTAACAGTAGCCAAATGAGACATATGGCTCCATACATGAGACTCTAAAGAACGACGAATTCAATCCTTCGCTTTTACGTCataaaacagttaaatataGCCTAAATGTGGGTGACAGTCTTCTTCTAATCAGGGAAAATTACGCATGAGAGCAAAATGAGAGATTAATCAGTTGATGTAACAGAAGAATTATATTTGTGTGAATTGAAATGTTCGTTAAcagtaatttactgtaaaagttGGCAAGAACACCATGTGAGTAACCCTTACCGTAACCATATGCTGTAGGAAGTGCATGTAGTTAATTAGTATTGCTTTGTAACaagaacactttaaaatagtGTAACCAAACATTTAGCTTCATTGTGCTTATGTGAAAAGTTgcgttaaatgtttaaaaaaaaatctcaaacaGAATATAGGTGTAAGATACTTTATCCTTAGATGTTCTCTATATAAAGATCCTTTCTCtggttttttttcaattgctaGCATAGTTTTTTCTGATCTCTATTCACATTGTCAAAACTTTTGCAAATGCTTAAACACGccatttcagaaataaagacTTAATGATCCAAACCTTAAA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23875 lncRNA downstream 31707 1219664 ~ 1221960 (-) True G16064
TU23886 lncRNA downstream 99087 1154300 ~ 1154580 (-) True G16073
XR_006248072.1 lncRNA downstream 139362 1111882 ~ 1114305 (-) True LOC122330728
TU23608 lncRNA downstream 158938 1092500 ~ 1094729 (-) True G15875
TU23589 lncRNA downstream 168857 1083440 ~ 1084810 (-) True G15866
XR_006248069.1 lncRNA upstream 16141 1273288 ~ 1274200 (-) True LOC122330712
TU23920 lncRNA upstream 33734 1290881 ~ 1291621 (-) True G16094
TU23927 lncRNA upstream 69172 1326319 ~ 1327991 (-) True G16100
TU23906 lncRNA upstream 71032 1328179 ~ 1331182 (-) True G16084
TU23960 lncRNA upstream 160747 1417894 ~ 1480682 (-) False G16124
XM_043227526.1 mRNA downstream 4432 1247022 ~ 1249235 (-) True LOC122330477
XM_043227516.1 mRNA downstream 4731 1247022 ~ 1248936 (-) False LOC122330477
XM_043227758.1 mRNA downstream 23827 1227203 ~ 1229840 (-) True LOC122330600
XM_043227478.1 mRNA downstream 70079 1179345 ~ 1183588 (-) True LOC122330455
XM_043230004.1 mRNA downstream 100905 1149958 ~ 1152762 (-) True LOC122332636
XM_043230060.1 mRNA upstream 4967 1262114 ~ 1263426 (-) True LOC122332678
XM_043227160.1 mRNA upstream 6541 1263688 ~ 1268261 (-) True LOC122330270
XM_043230068.1 mRNA upstream 13606 1270753 ~ 1273247 (-) True LOC122332690
XM_043226635.1 mRNA upstream 95943 1353090 ~ 1360764 (-) True LOC122329932
XM_043227168.1 mRNA upstream 123771 1380918 ~ 1383141 (-) False LOC122330283
XR_006248017.1 other downstream 70079 1164316 ~ 1183588 (-) False LOC122330455
TU23864 other downstream 100907 1147589 ~ 1152760 (-) True G16054
TU23858 other downstream 108150 1143803 ~ 1145517 (-) False LOC122329780
TU23851 other downstream 138965 1109491 ~ 1114702 (-) True G16048
TU23471 other downstream 354377 897601 ~ 899290 (-) False LOC122332393
TU24042 other upstream 363817 1620964 ~ 1652366 (-) True G16172
TU24079 other upstream 531098 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other upstream 531098 1788245 ~ 2000140 (-) False zc3h7ba
TU24084 other upstream 531098 1788245 ~ 2000329 (-) False zc3h7ba
TU24091 other upstream 589976 1847123 ~ 1850109 (-) False LOC122333107

Expression Profile