LOC122330455 (kdelr3,LOC107731665,LOC107563718,LOC107679478,LOC107674488)


Basic Information

Item Value
gene id LOC122330455
gene name kdelr3,LOC107731665,LOC107563718,LOC107679478,LOC107674488
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1164316 ~ 1183588 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043227478.1
CGCGGAAACCCGGATCCTGGTCGCGCGGAGCATCAGCCACGTCACCGATCAGCGGCGCGAGCGCACGCACCATCACAGGGACTTTGCAGTAAATTGTCGCGGATTCTGTTGCGCACATCTACTAAGAGCTTTCTGCCCGCAACCGGGTGACGCTGAGCAGCAGAacgagattttttttattattattattattactattattccAGCGGAGCGACCATCTGATCTGAGGATAGCTGCAAAACTCTTTAAACCCGGCGCTGGTTACTGATCTATAACATGAATATCTTCCGACTGTCTGGAGATGTTTGTCATCTGGTCGCCATCATTATTCTGTTCCTGAAGATCTGGAGGTCTAAATCATGCGCAGgtatTTCTGGGAAGTCTCAGGTGCTGTTTGCACTGGTCTTCACCACTAGATACCTGGACCTGTTCACGTCCTTCATCTCCATCTACAACACCGTCATGAAgGTGGTGTATCTGGTCCTGGCGTACGCCACCGTCAGCCTCATCTACTTCCGCTTCAGGAACTCGTACGACTCCGAGAGCGACTCGTTCCGTGTGGAGTTCCTGCTGGTGCCGGTGGCCGGCCTGTCGTTCCTGGAGAACTACGCCTTCACGCCGCTGGAGATCCTGTGGACGTTCTCCATCTATCTGGAGTCGGTGGCCATCCTGCCGCAGCTCTTCATGATCACTAAGACGGGCGAGGCCGAGTCCATCACCACACACTACCTGTTCTTCCTGGGCCTGTACCGCGCGCTGTACCTCGCTAACTGGGTGTGGCGCTATCACGTGGAGGGATTCTTCGACCAGATCGCCGTGGTGTCCGGCGTTGTCCAGACCATCTTCTACTGCGACTTCTTCTACCTGTACTTCACCAGAGTGCTGAGAGGAAGCGGTAAGATGAGTTTGCCGATGCCGGTGTGAGTCGTTGGACCAGGCCCCGCCCCTGCATTAGGCCACACCCAGTCGTGACATCATCACCGGCCGCTGCTGTAGTTCCTGTGTTGAGCTGCAGGCGTGGTCGGTGTAATCGTGCCTTACAGTGATCAGATCTGCTGGACGTGTCTCGTCTTTGATGCcttaatgtgtttctgttcataaagacaatgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacacatTCTGTAGTTCATAGTttgcttttctcatttattctcttttattcttgtttttctgttctgtagTACATGGTTTTGTTCTCGACTATAGTTTTTCATTCTGTAAAGGGAAGTTTGATTTAAGTGTTCTTGTGCCAATGTACCCAGAAGATCATGAATGTTTGTATAAACCACATTTCATACCAAGAATGACATTAAACAGATGTCTGGCAATAGCATaacgatttttttaatgaagacgGGCAGTTCGTCTGCCCTGGTTTTTATAAAGCATGCCAATAAAGAGTTTCTGTCTCTGAGCGCAGAAACACTTCAAACCA
>XR_006248017.1
CGCGGAAACCCGGATCCTGGTCGCGCGGAGCATCAGCCACGTCACCGATCAGCGGCGCGAGCGCACGCACCATCACAGGGACTTTGCAGTAAATTGTCGCGGATTCTGTTGCGCACATCTACTAAGAGCTTTCTGCCCGCAACCGGGTGACGCTGAGCAGCAGAacgagattttttttattattattattattactattattccAGCGGAGCGACCATCTGATCTGAGGATAGCTGCAAAACTCTTTAAACCCGGCGCTGGTTACTGATCTATAACATGAATATCTTCCGACTGTCTGGAGATGTTTGTCATCTGGTCGCCATCATTATTCTGTTCCTGAAGATCTGGAGGTCTAAATCATGCGCAGgtatTTCTGGGAAGTCTCAGGTGCTGTTTGCACTGGTCTTCACCACTAGATACCTGGACCTGTTCACGTCCTTCATCTCCATCTACAACACCGTCATGAAgGTGGTGTATCTGGTCCTGGCGTACGCCACCGTCAGCCTCATCTACTTCCGCTTCAGGAACTCGTACGACTCCGAGAGCGACTCGTTCCGTGTGGAGTTCCTGCTGGTGCCGGTGGCCGGCCTGTCGTTCCTGGAGAACTACGCCTTCACGCCGCTGGAGATCCTGTGGACGTTCTCCATCTATCTGGAGTCGGTGGCCATCCTGCCGCAGCTCTTCATGATCACTAAGACGGGCGAGGCCGAGTCCATCACCACACACTACCTGTTCTTCCTGGGCCTGTACCGCGCGCTGTACCTCGCTAACTGGGTGTGGCGCTATCACGTGGAGGGATTCTTCGACCAGATCGCCGTGGTGTCCGGCGTTGTCCAGACCATCTTCTACTGCGACTTCTTCTACCTGTACTTCACCAGAGTGCTGAGAGGAAGCGGTAAGATGAGTTTGCCGATGCCGGTGTGAGTCGTTGGACCAGGCCCCGCCCCTGCATTAGGCCACACCCAGTCGTGACATCATCACCGGCCGCTGCTGTAGTTCCTGTGTTGAGCTGCAGGCGTGGTCGGTGTAATCGTGCCTTACAGTGATCAGATCTGCTGGACGTGTCTCGTCTTTGATGCcttaatgtgtttctgttcataaagacaatgttgtgaggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
kdelr3 Predicted to enable KDEL sequence binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein retention in ER lumen; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be active in cis-Golgi network and endoplasmic reticulum. Predicted to colocalize with COPI-coated vesicle membrane. Is expressed in several structures, including hatching gland; median fin fold; notochord; pectoral fin musculature; and polster. Orthologous to human KDELR3 (KDEL endoplasmic reticulum protein retention receptor 3).

NR:

description
PREDICTED: ER lumen protein-retaining receptor 3

GO:

id name namespace
GO:0006621 protein retention in ER lumen biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046923 ER retention sequence binding molecular_function

KEGG:

id description
K10949 KDELR; ER lumen protein retaining receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043227478.1 True 1476 mRNA 0.50 5 1179345 1183588
XR_006248017.1 False 1179 transcript 0.54 7 1164316 1183588

Neighbor

gene id symbol gene type direction distance location
LOC122332636 LOC107674470,LOC107731661 coding downstream 11554 1149958 ~ 1152762 (-)
ccdc134 ccdc134,si:dkey-167k11.5,LOC107561099,LOC107674487,LOC107561218 coding downstream 30529 1128574 ~ 1133787 (-)
LOC122332629 NA coding downstream 38453 1109454 ~ 1125863 (-)
LOC122330439 NA coding downstream 86060 1076098 ~ 1078256 (-)
LOC122330038 NA coding downstream 102248 1059281 ~ 1062068 (-)
LOC122330600 polr2f,LOC107727050 coding upstream 43615 1227203 ~ 1229840 (-)
LOC122330477 NA coding upstream 63434 1247022 ~ 1249235 (-)
LOC122330412 NA coding upstream 70079 1253667 ~ 1257147 (-)
LOC122332678 NA coding upstream 78526 1262114 ~ 1263426 (-)
LOC122330270 NA coding upstream 80100 1263688 ~ 1268261 (-)
G16073 NA non-coding downstream 9736 1154300 ~ 1154580 (-)
LOC122330728 NA non-coding downstream 50011 1111882 ~ 1114305 (-)
G15875 NA non-coding downstream 69587 1092500 ~ 1094729 (-)
G15866 NA non-coding downstream 79506 1083440 ~ 1084810 (-)
G15808 NA non-coding downstream 202586 960955 ~ 961730 (-)
G16064 LOC107711804,LOC107563722,LOC107674484 non-coding upstream 36076 1219664 ~ 1221960 (-)
G16084 NA non-coding upstream 71467 1255055 ~ 1331182 (-)
LOC122330712 NA non-coding upstream 89700 1273288 ~ 1274200 (-)
G16094 NA non-coding upstream 107293 1290881 ~ 1291621 (-)
G16100 NA non-coding upstream 142731 1326319 ~ 1327991 (-)
G16054 mei1,LOC107674470,LOC107731661 other downstream 11556 1147589 ~ 1152760 (-)
LOC122329780 mei1,LOC107674482,LOC107561079,LOC107674470 other downstream 14423 1134810 ~ 1149893 (-)
G16048 NA other downstream 49614 1109491 ~ 1114702 (-)
LOC122332622 LOC107701866 other downstream 88989 1065482 ~ 1075327 (-)
LOC122332559 NA other downstream 147966 1015147 ~ 1016350 (-)
G16172 NA other upstream 437376 1620964 ~ 1652366 (-)
zc3h7ba LOC107563727,LOC107672930,LOC107722838,LOC107572808 other upstream 604657 1788245 ~ 2000474 (-)
LOC122333107 NA other upstream 663104 1846692 ~ 1850280 (-)
pkn1b LOC107672927,LOC107755614,LOC107742419 other upstream 998938 2182526 ~ 2210233 (-)
G16402 ubn2b,LOC107567211,LOC107677340,LOC107741349,LOC107696333 other upstream 1119739 2303327 ~ 2362399 (-)

Expression


Co-expression Network