LOC122330600 (polr2f,LOC107727050)


Basic Information

Item Value
gene id LOC122330600
gene name polr2f,LOC107727050
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1227203 ~ 1229840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043227758.1
TCTCCACGGACCCTAAAAACCGCGGCACGCCGGAAGTTGGTTCCATGCTTCGCCTCGTCTGGTGTCCGAGGCGCCACAACAACGGAGTTTTCTGCGAAATCGTTACTTAAATCGTTCTTACGACGCGCTAGACAATAACAATGTCTGACAACGAAGACAATTTCGATGACGGAGATTTCGATGATGTTGAGGATGAAGAGCCTCTGGATGACCTGGAGAACGTGGAAGATgaggACCAGGAGAACGTCCAGATCCTGCCGGCGGGTGAAGGACagcaggccaatcagaagagaatCACTACTCCTTACATGACTAAGTACGAGCGTGCGCGGGTGCTGGGAACACGAGCGCTGCAGATCGCGATGTGTGCGCCGGTGATGGTGGAGCTGGAAGGAGAGACGGATCCGCTGCAGATCGCCATGAAAGAGCTCAAGAGCAGGAAGATCCCCATCATCATCCGCCGGTATCTGCCTGATGGGAGTTATGAGGACTGGGGCTGTGACGAGCTCATAATTACTgactgagacacacactcacacacacacacacacacacacacactcacactcacacacacacactcacactcacacacacacacacagatctctaGAGCTTTGTTTCATCCAGTAGTTCATGTGTTTGTCCGCAGGAGGGCAGCAGAAACACAGCACAAACTTCTTCACTcagtttcattatttaatgttcatttctttgttttatccATGCgatattaaaactgttttttgtaGAAAGGTATATGCTGTGCTCTTTTCTCCTTATTGTTGTGAAACGATGTGAAGGATAAATCTGTTGATTACAACAAAATAAGATGTTCGTTACAATCATTTATAAAAACGGagttaaaatgtcaaa

Function

symbol description
polr2f Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2F (RNA polymerase II, I and III subunit F).

NR:

description
DNA-directed RNA polymerases I, II, and III subunit RPABC2

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03014 RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043227758.1 True 876 mRNA 0.47 5 1227203 1229840

Neighbor

gene id symbol gene type direction distance location
LOC122332636 LOC107674470,LOC107731661 coding downstream 74441 1149958 ~ 1152762 (-)
ccdc134 ccdc134,si:dkey-167k11.5,LOC107561099,LOC107674487,LOC107561218 coding downstream 93416 1128574 ~ 1133787 (-)
LOC122332629 NA coding downstream 101340 1109454 ~ 1125863 (-)
LOC122330439 NA coding downstream 148947 1076098 ~ 1078256 (-)
LOC122330038 NA coding downstream 165135 1059281 ~ 1062068 (-)
LOC122330477 NA coding upstream 17182 1247022 ~ 1249235 (-)
LOC122330412 NA coding upstream 23827 1253667 ~ 1257147 (-)
LOC122332678 NA coding upstream 32274 1262114 ~ 1263426 (-)
LOC122330270 NA coding upstream 33848 1263688 ~ 1268261 (-)
LOC122332690 LOC107705851 coding upstream 40913 1270753 ~ 1273247 (-)
G16064 LOC107711804,LOC107563722,LOC107674484 non-coding downstream 5243 1219664 ~ 1221960 (-)
G16073 NA non-coding downstream 72623 1154300 ~ 1154580 (-)
LOC122330728 NA non-coding downstream 112898 1111882 ~ 1114305 (-)
G15875 NA non-coding downstream 132474 1092500 ~ 1094729 (-)
G15866 NA non-coding downstream 142393 1083440 ~ 1084810 (-)
G16084 NA non-coding upstream 25215 1255055 ~ 1331182 (-)
LOC122330712 NA non-coding upstream 43448 1273288 ~ 1274200 (-)
G16094 NA non-coding upstream 61041 1290881 ~ 1291621 (-)
G16100 NA non-coding upstream 96479 1326319 ~ 1327991 (-)
G16124 NA non-coding upstream 188054 1417894 ~ 1480682 (-)
LOC122330455 kdelr3,LOC107731665,LOC107563718,LOC107679478,LOC107674488 other downstream 43615 1164316 ~ 1183588 (-)
G16054 mei1,LOC107674470,LOC107731661 other downstream 74443 1147589 ~ 1152760 (-)
LOC122329780 mei1,LOC107674482,LOC107561079,LOC107674470 other downstream 77310 1134810 ~ 1149893 (-)
G16048 NA other downstream 112501 1109491 ~ 1114702 (-)
LOC122332622 LOC107701866 other downstream 151876 1065482 ~ 1075327 (-)
G16172 NA other upstream 391124 1620964 ~ 1652366 (-)
zc3h7ba LOC107563727,LOC107672930,LOC107722838,LOC107572808 other upstream 558405 1788245 ~ 2000474 (-)
LOC122333107 NA other upstream 616852 1846692 ~ 1850280 (-)
pkn1b LOC107672927,LOC107755614,LOC107742419 other upstream 952686 2182526 ~ 2210233 (-)
G16402 ubn2b,LOC107567211,LOC107677340,LOC107741349,LOC107696333 other upstream 1073487 2303327 ~ 2362399 (-)

Expression


Co-expression Network