RNA id: XM_043226361.1


Basic Information

Item Value
RNA id XM_043226361.1
length 2641
RNA type mRNA
GC content 0.56
exon number 24
gene id LOC122329780
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1134810 ~ 1149893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAGATGTGTCAGTACCCggatgtggtgtgtgtgttgatgaACCTGAAGGCCGGAGCAGAAGATCCTGTGCTGTATGAACCACTGCCGCTCATCCTGAAGAAGctgctGTTGAGCGCTCAGGACTCTCTGCAGGTGGTTTCtgtgcgctgtgtgtgtgcCGTTCTGATTCATGATCCTCTCCGCTTCTCTTCGTCCTTCATTCAGGCTGATTTACCCGagttcCTGCTGGAGGTGATGAGCGGCGGCTGCGGTGACGTCTTGTTGTGGTCTGTGTTCAGTTGTTTGCTGCTGCTGTCTGAAGACCCGCTCTTCTTCTCTCAGTGTCACGCGGTCTACggtgtTGAGCCGTTGGTTCGCTCTCTGAAAGAGACTCTGGAAAAATCCAACACTGAGGTGCAGAAAAAAGGACTGGAGCTGCTGATGGCCATATTGGACAGgCAGCCTGCTGCGGTGCGTCTCTTTCCGACCGCCTCTGAGTTTTCCGCCGTGTGTGATGTCATCGTGGAGGGCGTGGCCTCGTCCTGTCTGCAGGTGTCCATGTGTGCACTGAGAGCCACTGCTGTCCTGctcaggcccAGTCATCAGTCCAGTCCGGTTCAGCTCACAGACGTCAGGAGGATTGTGGAGGTGGTGATGACCAAAACCACTGagcatcatcacacacacagcagagagaGCTGCTCTGCTTCAGGACTTCTGCTGCAGACTCTCTCGTGCCTGGACGCCGCCTGCAGgttggtggaggcgtgtgtgtgtgactctgctCTGATGGACGGTGTGTGTTCAGCTCAGGAGACGctggagtctgtgtgtgtgtttctgctgcaCTGCTGCGACGCTGCCTGCATCCCGGCAGTGACTggtgtgtgtgagtgcatctCGTCTCCTCAGGTGCTGCAGCTCTTCCTCTCGGTTCTGTTACGTCAGTTTTCTTTGAGTCCTGATCACATGACCTCCTTCTCCAAGAAGCTCGccgCGTCTGGATTCATCAGATTGACTCTGCAGAGTAAAGCTCAGCTGTGTTCAGGGAACagGAACACGCCTGGACCAATGAGCTGCCAGgtgtgtgtgagcgtcCTCTCTAAAGCCCTGTCCTCCTGCCCGCCGCTCTTCTCTCGCGCTCTTCCTCTGTCCGTCCTGAACTTCCTCTTCCTGTATCCGGAGCTCTCGGAGCGCGTCGGGGCGCCGGCTCTGACCGGACGCCTGTCGGAGGAGACCGAGGAGCGGGAGCTGCAGGAGCTGCTTCACACACACCCTGCAGCGCTGCTGGCCACGctggccgTGGCGTGTGACGCTGACTCTGCGGCTCGTCTCTCAGCCGTCGGGGTGCTGCGGTGTTTCCTGCGATCGGTCGACGGAGTCGGCTTCAGCGGGGCGTCCGGTCTCTGTGATCAGATCCGAGCCGCGCTGCTCGGCGtcctgcagagacacacacacacggACGGTCTGTCTGTGCTGCTGGACGTGTCGTCTGTGGTCCACTCGTCCGGTCAGACGGAGCACACCGACTTCAGACTGCTGTACCACgtcagTAATCTTGCAGGAAAGCTGGACTCCAGTGGTGAATCTGAGCTGCTGCTGTCTGTTTTTAACTTCCTGTACTGCTTCCTGTCTGTGTGTCCTGTACACTCTACTGATagagccgTGTCTCTGCTGCTGGGAAACGTCAGGCTGCTGGAGCTGCTGGAGGAGGTTTTGtcgtcctcttcctcctcgTCTTCATCCCTGCGGTGCTCCTCTCTGCTCCTGCTCTCCTGCCTCACACTCCTGCAGCACAAACACTCTGCTCAGgttcACAGGAGCGTCAGTGTGGATCTACATCACATCATCAGACGACTGGCCTTCAGCAAGAGAAACATGGACACACTACTCATcaagtgcaGTGTGCGGTTTGTGCAGGTGTGTTTGGATGTGGACGTGTCtgctctgctgtgtgtgtgtgacgcagCGCTGCGgcgacctctgacctctctgGACGGTGCTCTTCATCCGATCGGACACAGCGGCGCTACGAGCCTCATGACAGCGCTCAGAGCACTCATGCTagtggcGCAGGATCTGATGGTAAGCGCCGCTCTGAACTGTCTCAGGTCTCTGATGGGGTTTCTTCACAGACGGAGCCCTGAAaccgcgCAGCACATGGTGTGTCAGCCGTGGACGCGCTTCTTGCTCTTCTCTTTACTCTCCTGTGACCAGACACTGAGACCTGCAGCGCTGCAGCTGCTcacacagatttttaacaCAGATctGGTGTGTTCGAGTGGCGGCGTCTCACACTGGAGGAGTGaagtagagtgtgtgtgtgacgagATTGAGAAACAAGGAGCGATGAACCTCACTGatgacagaacacacacactgagactgATGCTCACACAGtgttgTGCTCTTTCTTCTCCTGATGATCTGAGGATGAGGATGGAGGCTGTCCTGAAGTCTCTCAGACATCTTCCTCCCTCTGAGAGCTCAAGCAGACACGTGCTTCGTGTTGGACGAGTCTCCGTCTTTCTTTCTGACTTCACTGTCAGCTCTCAGGAcctatgaaacacacacacacacagagacagacacacacacacacacacacacacacacacacagagacagacacacacacacacacacacacacacacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248072.1 lncRNA downstream 20505 1111882 ~ 1114305 (-) True LOC122330728
TU23608 lncRNA downstream 40081 1092500 ~ 1094729 (-) True G15875
TU23589 lncRNA downstream 50000 1083440 ~ 1084810 (-) True G15866
TU23578 lncRNA downstream 67872 1065482 ~ 1066938 (-) False LOC122332622
TU23554 lncRNA downstream 118464 1015865 ~ 1016346 (-) False LOC122332559
TU23886 lncRNA upstream 4407 1154300 ~ 1154580 (-) True G16073
TU23875 lncRNA upstream 69771 1219664 ~ 1221960 (-) True G16064
TU23909 lncRNA upstream 105162 1255055 ~ 1331182 (-) False G16084
XR_006248069.1 lncRNA upstream 123395 1273288 ~ 1274200 (-) True LOC122330712
TU23920 lncRNA upstream 140988 1290881 ~ 1291621 (-) True G16094
XM_043227249.1 mRNA downstream 1023 1128574 ~ 1133787 (-) False ccdc134
XM_043227266.1 mRNA downstream 1251 1128574 ~ 1133559 (-) False ccdc134
XM_043227257.1 mRNA downstream 1251 1128574 ~ 1133559 (-) True ccdc134
XM_043229990.1 mRNA downstream 8947 1109454 ~ 1125863 (-) True LOC122332629
XM_043227417.1 mRNA downstream 56554 1076098 ~ 1078256 (-) True LOC122330439
XM_043230004.1 mRNA upstream 65 1149958 ~ 1152762 (-) True LOC122332636
XM_043227478.1 mRNA upstream 29452 1179345 ~ 1183588 (-) True LOC122330455
XM_043227758.1 mRNA upstream 77310 1227203 ~ 1229840 (-) True LOC122330600
XM_043227526.1 mRNA upstream 97129 1247022 ~ 1249235 (-) True LOC122330477
XM_043227516.1 mRNA upstream 97129 1247022 ~ 1248936 (-) False LOC122330477
TU23851 other downstream 20108 1109491 ~ 1114702 (-) True G16048
TU23471 other downstream 235520 897601 ~ 899290 (-) False LOC122332393
TU23449 other downstream 303767 828759 ~ 831043 (-) True G15773
TU23402 other downstream 465485 666300 ~ 669325 (-) True G15742
TU23276 other downstream 1007723 115623 ~ 127087 (-) False LOC122330541
XR_006248017.1 other upstream 14423 1164316 ~ 1183588 (-) False LOC122330455
TU24042 other upstream 471071 1620964 ~ 1652366 (-) True G16172
TU24079 other upstream 638352 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other upstream 638352 1788245 ~ 2000140 (-) False zc3h7ba
TU24084 other upstream 638352 1788245 ~ 2000329 (-) False zc3h7ba

Expression Profile