RNA id: XM_043227249.1


Basic Information

Item Value
RNA id XM_043227249.1
length 1478
RNA type mRNA
GC content 0.55
exon number 7
gene id ccdc134
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1128574 ~ 1133787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAAACCGCGCGGGGATGACGTCAGCGCGCGTGCGTCCCTCTAAGCGCTCCGTGCGGAAACCTGGGGGCGCGCGCGCGTGGCAGCAGCGGACTGGAGGACGCGCGCGGCATGTAAATGATCCGAGCAGACGCGCCGCTCGCATCGCGACACGACAGTCCGAATCCGACGGCCGCTCGACGCGTGTTCTCCGACGCTCGCGCGCGCCCGACGCTGTAGtGGTcatgttgagtgtgtgtgctctgctgctgctggcgGCTCCGGCGGCCCTCGGCTCCGACTCGGACCCTCAGAGACCCCGACACGACTCCAACCTGGAGATCTATAAGCGTCTGTTCGAGAGCAAGAGGAAGGATCAGCTGAACGCTCTGAAGAACCTGGTGGAGCTCAACGACGTCAACCAGCAGTACAAGATCATAGACATCATGCTGAAGGGCCTCttcaagGTGCTGGAGGACTCCAGAGCTGTTCTTATAGCTGCTAACATGCAGCCGGACGATCCGTTCCCACTCGACGACAAAATCAAGGAAGCGTACTCTCACGTGGTGGAGAACACGGCCTTCTTCGGAGACGTGGCTCTACGCTTCCCGCGCATCGTCCATCACTACTACGACCGGGACGTGGACTGGAGCCGCCTGCTGCGCTGGGGCCTGCGCTTCTGCAACCAGACGGGCGTCTTCAGCGGAGGAGCCCATCAGCACGTGCTCACGCTGATGTCTCAGGAGCTGGGCATCACCGAGAAATCTGCAGACTTCGTCAATCCGTACCGCACCGAGAGAGACGacGTGCTGCACACGGCCGAGGCCTTCCAGAAGATTCTCCGCGAggaagagaagaggaggaggaaggaggagaagaggaaagAGATCCGGAAAGGGCCGCGGATCTCCCGCTCTCGCAGCGAGCTCTAGATCCTGAAGATCAGCCGTTTACACTCGATCAGGGAGCCCTGCTGGACCGGCCGCGGGCCTCAAACACGTTTACAGCTCTCAGAACACTTGAAccggtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcagtgctGTGTGGGGTCGAGGGGGAGGGGCCGGGAGGGTCGGAGAGGGTCTGTGTTTTAGATGAAGGTATTTTGAACACTGATATTTCCATATTTAACACGCTTGGTAAGGTTTGATAATATAGCGGGGAAATCTGAAGTTCCCGTATGAAACTGAgttcaatatttaaatttactttattgagaaattaatgtcttttttttgctttcttcgGAAACTATTATTCGTTAAAAAACCAatgttatattgtgtgtgtgtgtgagatcaggaCTCTTTAAAGACCGATCCCAATCGAAGTGATCTCAGTGTGAAGGCGTTTTCTCCGATCTGACGTCCGAGGCTTTATTAAACCGTTCACGTGACTGTTATTGAAATCTGTGCAGCGTCGGTGGGAGGTCGTTACTGACCGAAGGAATAAAGTCTTATTTAACTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248072.1 lncRNA downstream 14269 1111882 ~ 1114305 (-) True LOC122330728
TU23608 lncRNA downstream 33845 1092500 ~ 1094729 (-) True G15875
TU23589 lncRNA downstream 43764 1083440 ~ 1084810 (-) True G15866
TU23578 lncRNA downstream 61636 1065482 ~ 1066938 (-) False LOC122332622
TU23554 lncRNA downstream 112228 1015865 ~ 1016346 (-) False LOC122332559
TU23886 lncRNA upstream 20513 1154300 ~ 1154580 (-) True G16073
TU23875 lncRNA upstream 85877 1219664 ~ 1221960 (-) True G16064
TU23909 lncRNA upstream 121268 1255055 ~ 1331182 (-) False G16084
XR_006248069.1 lncRNA upstream 139501 1273288 ~ 1274200 (-) True LOC122330712
TU23920 lncRNA upstream 157094 1290881 ~ 1291621 (-) True G16094
XM_043229990.1 mRNA downstream 2711 1109454 ~ 1125863 (-) True LOC122332629
XM_043227417.1 mRNA downstream 50318 1076098 ~ 1078256 (-) True LOC122330439
XM_043229981.1 mRNA downstream 53247 1065482 ~ 1075327 (-) True LOC122332622
XM_043226826.1 mRNA downstream 66506 1059281 ~ 1062068 (-) True LOC122330038
XM_043226969.1 mRNA downstream 71386 1051304 ~ 1057188 (-) True LOC122330129
XM_043226361.1 mRNA upstream 1023 1134810 ~ 1149893 (-) False LOC122329780
XM_043226353.1 mRNA upstream 1023 1134810 ~ 1149893 (-) True LOC122329780
XM_043230004.1 mRNA upstream 16171 1149958 ~ 1152762 (-) True LOC122332636
XM_043227478.1 mRNA upstream 45558 1179345 ~ 1183588 (-) True LOC122330455
XM_043227758.1 mRNA upstream 93416 1227203 ~ 1229840 (-) True LOC122330600
TU23851 other downstream 13872 1109491 ~ 1114702 (-) True G16048
TU23471 other downstream 229284 897601 ~ 899290 (-) False LOC122332393
TU23449 other downstream 297531 828759 ~ 831043 (-) True G15773
TU23402 other downstream 459249 666300 ~ 669325 (-) True G15742
TU23276 other downstream 1001487 115623 ~ 127087 (-) False LOC122330541
TU23858 other upstream 10016 1143803 ~ 1145517 (-) False LOC122329780
TU23864 other upstream 13802 1147589 ~ 1152760 (-) True G16054
XR_006248017.1 other upstream 30529 1164316 ~ 1183588 (-) False LOC122330455
TU24042 other upstream 487177 1620964 ~ 1652366 (-) True G16172
TU24079 other upstream 654458 1788245 ~ 2000140 (-) False zc3h7ba

Expression Profile