RNA id: XM_043226343.1


Basic Information

Item Value
RNA id XM_043226343.1
length 4018
RNA type mRNA
GC content 0.51
exon number 24
gene id zmp:0000000896
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1538691 ~ 1550787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agagagagagggagagagagagagagagagacagagagagagagggagagagagagagacttcacCTCGCATCTTCCTCATCGGGGTCGAGTCTGTTTGAAGAGTCGCTGttgtgttcatttctttcatctcttaCTCTTCCAGCTGAATCATGAGCGGCGAGTGGCTGCTGGGAGGCTCTCAGTCAGACGAGGAGAAGCACGAGGAGCTGTGGGAGCGAGTGGAAGGAGTGAGGCACAAGCTCACCCGTGTTTTGAACCCGGCGAAGCTGACGCCCTACCTGCGGCAATGCAAGGTGATCGACGAGCAGGATGAGGACGAGGTGCTGAACTCCAGCCAGTATCCGCTGAGAATCAGCCGAGCCGGGCGTTTACTGGACATCCTGAGGGGGCGTGGCGAGCGTGGTCTCCAGGCCTTCATGGAGTCTCTGGAGTTTTATCATCCGGAGCAGTTCACGCAGCTGACCGGACAACAGCCGACGCAGCGCTGCTCCATCATGCTGGATGAGGAGGGTCCTGAGGGTCTGACTCAGTTCCTGCTGCTGGAGGTTCGTAAGCTGCGAGAACAGTTGCACTGCAGTCGTGTGTGTGAGCGGCGTCTGTCTCAGCGCTGTCGCGTGGCCGAAGACGAGCGCAGCCGAGCTGAACGCAAAACGCAGGAGCTGCGGCAGGACCGCACACAGCTGGAGAGGTTGAGGCAGGACTGGGAATCTGGCAGTCGTGAGTTGGGTTTGCTCAAGGAGAGACATCTGGAGCAGGCTGTGAAATACTCGCGAGCCTTAGAGGAACAGCGTAAAGCTACTGCACGCGAGACAGAACTGCTCACAGAGGTGGAGCAGCTCAGGAGGAGATTACAGGAGGTGGAGAGACCGGTTCATGTTGGCTCCGCCTCCTCGAGCAGTGGGGTGTGTGACAGCGCCCCCGCAGGACCGGAGGAAAGGCCACCCCTCGCCGTGAGAAACAAACAGTTTAACTCTGGAAATCAGGCTCTGTTGGACATCCTGAAGCAGGACAGGCGGGAAGCGGTGGAGCAGCGGCAGGAGCTGAGCAGCACCATCGCCCGACTGCAGGGGGAGCTGGAGAGCTCCGAGACTCAGAGAGAAAAATTGGCGTCTCAGTGTGAGCAGCTGCAGCTGCGTCTCAGAACCCTGCAGCTGGACTGGGAGACGGAGCAGAGCAGGAGTGTGTCCTACTTCAACCAGATCATGGagctggaaagagagagagaccaggcGCTGCGCAGTCGCGACAGTCTGCAGCTGGAGTTCACCGACTGCCTCCTGGACAAGAACCGTCTGCGCAAACGCATCGCAGAGCTGCAGAGCAGTGTGGAGCAGCtgcagagagagatggagaggaaccgagagcgGAGAGAGCAGAGCAACACCTGCATGCACTGCtCTCACATGTCTTTGTTCAGTGAGGATCAGTGTTTCGACCCGTGTTGTTCGGTTGATTTGAGTCCCAGTCCACTCACACTCAGAGCTCATCTGAAGtcaACCTCACAAGCTCAGATATGTGAGCAGTCTGAAGACTCCTACTTCTCTAACTCAGAGGAGAATCTGCTCATGccggagTGTAACGATGAGAAGGACATCAACAGACTCTCCACATTTCCCTTTCCTCCCTGCCTGAACTCAATCAACCGCAGAAAAAACATAGAGTTTGATCTGAACTCTTGGGGGAGTGATGAGAATGAACCACATACAGagGACTCGGACTCGTGTCTGATGAGTTCGTGGAGCTCTCTACCATCTCAGCTCTTTCCTCCTGACGTGATCAGCGTGACTCCGACTCTCCCGGTCAAACCTTCATCCTCCTCCCCGAGATCGGTGCTCTCCTTGTCCAAAAGCGCCAGTCTGGCGGACGACATCACTATCATCGGAGGGAACCGGAcgggtgtgtttgtgcagacGGTCAGGGCGGGCTCGCCTGCGCAGATCTGCGGCCTGAAGGAAGGCAGCGAACTAGTGGAGCTGGATCAGGTGTTGTTCGGCGAGGGTCGTGTTCGTCTCAGTCAGTGCACGGCTGAAGTGGCTCATTTCTCACTGCAGTGGTGGAGCGAACCCAACgcgctcaaacacacacacaaccccgACGGTTATTCCCGTTTGCTCGCTGAGCTCTCGTCCCCGTCGTTCACCGGCGCAGACTCGTTCTACGTGCGTGTGAACCTTGACCTCTGTCACCACGGCGACCCGCCGCGTCTCAGGGTTTGCTGTGACGACGTCCTGCACGTCACCGACACGCGTTACAACGGTAAATACCAGTGGCGCTGCGTTCGCGTGGACAAACACACGGGGGCGCCGCTGCAGGCCGGAGCCGTGCCCAACTACAACAGGGCCCAGCAGCTGCTGTTGGTGAGACTCCGTACGATGGCGCTGGAACAGAATCAGTACAGGAGGAAGTTCTGTAAGAAAACCTCTCAGCGCGTTCGGCTCATTAAAGCGGTCGCGGCGAACTATCGCGAGATTGGCTCGTCCAGTCCGGTGCTCTACACGCTCAGCAATCgtcatGAGGAGCAGCTGATCCCGTTCAGTCTGGTTCAGATGGTTGAGGTCAACAACAAGCGGCCGGTGGTTTTCTCTCCGTCGATCCTGTCCCGAGGGATCATCGAGCGTCTGCTGCAGCCGGCAGAATCCGGTCTGGATTTCAACACCTGCCATCCAGAGCCAGTGGAAAGTTGCATGCATCAGGATAAGAGCGTGTTCCTCACCGACTCCACAGATCAACCACTAGGAATCAAACTACAGAGCATCGAGGAGGTTATTAACCAGgacaaACACTGTCTGCTTCAGCTGGGCTTGAATCATGTGGAGAACCTCCTGAAGCAGAGCATCTATCCCATCATCATCTACATCAAACCCAAAGACAAGAAGGGACGCAAGTTCAGGAAGCTGTTATTGGGCCAGGCTGAGGAGGACCTGATGGAGGCCTGTCAGATGGAGGAGCTTCAGCTGGAGACTCTCCCCGTGATGTTCAACACGGTGGAGCCGAACGAGTGGAGCAGCACCGACGAGCTCCTGGCCATCATACGCAGCAGCATCCTGAGCCAGCAGAGCAGCGTGGTGTGGCTGGAGCAGGAGCGACTCCAGTAGAGActcatatactccagaatgagAATCCAGTCATTagcatttcaaaaaaattatgaaatatatatatatatatataaacaaactgaTGCCGAAGATTGGGTTTTCTAAAGTTTAATGTTCACGTTTTATAATCATCTGTACTTGAACTGTACTGTATATCGTTGCATCTGTGAAAGTATCTGTATTTATTATGATCTCCAACCATGAATTCCATGACTACATTGAGACGCTGTTTGGGATGGACTACCATCAGGTGTTACAATCGAACATATTTCTGCTGTTGATCAGTGATACATCTTTTAACCACCTAAGACTTGGTTAGCATATGGATTGAACTTATGTTGTtttaagggagaaaaaaaaaaacaattccgGGACTAATAGAAAGACATGCATAggcaaaaataattgttttttaaaaatcaaaaatacatttttttctccatttcacaTTTTCCAGAGATGCTGATTTGTGacagtatttaaatttaaatgataattaccaaatatatttccataagtgtcactaaatgaaaaaaaaataaatacattttttgcagaCCATGGTCAAGGTAAAACATCCAATCATTTGGTATCTCTGAAATGTACATGACATCCAGACTTAAAACTCTGGCATGTAGAGTGTCTTAAGACTACAATATAATGTCCATATATAAAGACGCATGGTCTTAAGAGGGTAAATGGTTATATTTCTCTCAATTAGTTCAATAACACAAATAGCTCTTTTTACAAGTTAAATTATGAACATATCTACTGTGAAGACGCTTTGCAGCTCTTCCTTTAAGTCCTCTATAAAACAACCAAAGAACACTTCTACGACTCATCATagttaatattgttatttgatGAAGCGTAAATTGCCTTTTAACATTATActtgcaataaaatatttacaattgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23960 lncRNA downstream 58009 1417894 ~ 1480682 (-) False G16124
TU23963 lncRNA downstream 58244 1417894 ~ 1480447 (-) False G16124
TU23964 lncRNA downstream 58244 1417894 ~ 1480447 (-) False G16124
XR_006248079.1 lncRNA downstream 83631 1453240 ~ 1455060 (-) True LOC122330746
TU23965 lncRNA downstream 104880 1430753 ~ 1433811 (-) True G16125
TU24015 lncRNA upstream 6615 1557402 ~ 1557841 (-) True G16159
TU24024 lncRNA upstream 14406 1565193 ~ 1578960 (-) True G16161
XR_006248054.1 lncRNA upstream 36054 1586841 ~ 1588429 (-) True LOC122330691
TU24034 lncRNA upstream 66461 1617248 ~ 1647616 (-) True G16170
TU24037 lncRNA upstream 69120 1619907 ~ 1865318 (-) True G16171
XM_043226172.1 mRNA downstream 383 1530412 ~ 1538308 (-) True LOC122329710
XM_043226083.1 mRNA downstream 31223 1492543 ~ 1507468 (-) True tnrc6bb.1
XM_043227830.1 mRNA downstream 46941 1483985 ~ 1491750 (-) True LOC122330636
XM_043227176.1 mRNA downstream 155550 1380918 ~ 1383141 (-) True LOC122330283
XM_043226764.1 mRNA upstream 31301 1582088 ~ 1585707 (-) False LOC122329992
XM_043226756.1 mRNA upstream 31301 1582088 ~ 1585707 (-) True LOC122329992
XM_043230346.1 mRNA upstream 34924 1585711 ~ 1586511 (-) True LOC122332889
XM_043227402.1 mRNA upstream 56277 1607064 ~ 1610850 (-) True LOC122330436
XM_043226320.1 mRNA upstream 112878 1663665 ~ 1680199 (-) True gucy2ca
XR_006248017.1 other downstream 355103 1164316 ~ 1183588 (-) False LOC122330455
TU23864 other downstream 385931 1147589 ~ 1152760 (-) True G16054
TU23858 other downstream 393174 1143803 ~ 1145517 (-) False LOC122329780
TU23851 other downstream 423989 1109491 ~ 1114702 (-) True G16048
TU23471 other downstream 639401 897601 ~ 899290 (-) False LOC122332393
TU24042 other upstream 70177 1620964 ~ 1652366 (-) True G16172
TU24079 other upstream 237458 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other upstream 237458 1788245 ~ 2000140 (-) False zc3h7ba
TU24084 other upstream 237458 1788245 ~ 2000329 (-) False zc3h7ba
TU24091 other upstream 296336 1847123 ~ 1850109 (-) False LOC122333107

Expression Profile