RNA id: XM_043226320.1


Basic Information

Item Value
RNA id XM_043226320.1
length 5718
RNA type mRNA
GC content 0.49
exon number 27
gene id gucy2ca
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1663665 ~ 1680199 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACCTCTCACCTGCTTCATCACACCTGAGACCTGAAACAGTGACTACTACCGGAATAACGgacatataaaaatgcaaataactgTAATGAGTTATGAACTGAATTAAAGCACGAAATTCTGACCGACACACATACTATATtgtgcataaaaaatatgtagattGGGGTAGCTTTGATCTCGCGAGCCACTTTAATTACCAAAACATGAAACCAGCATACATGAATTAACATCGTGAGCACACACGGGAGATAAACAAAGAAACAGTCATGCATTTAGATATATGGTTTAAGACCTCAGTCATCACAGATGCGTGTAGTTATTTAgagtgaaaataaatcaaatgtataaatgaatacagtttTGCATTTTCTCGAAACTCCCAAATCGTCAAATTAAATTCGCAAAAACAAAATCGTTTCCCCTGTACTCAAAATCAGAGGAAGCCTTCGAATCATGCACACAGGCCTATTAGTGAGTAATAGCCCAGACCTTTCATTACACACTACAcatcaaaaagaagaagaaagagcagtgacacacacacacacaacatttacCATAgcctataaataaacattttacaattaaacacacacatacgactggaaagttcaaaataagAGAGGAAGATATTTTTTACGTGTATATTAcactattgatttattttgcattgcattgtttacactgtattttgttcatttcaatATATTCTTGTGtaaaattgcaatatataatatgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccttagCCAGGCCTCGACAAGACAACACACTGTGTCGCAACTCCACGCAcgaatataataaaagtaataaaaagctGCTGTTGCTCGTCCTCTCAGACTGACTGAACCAGCGCTGGAAGATTCACACATTCAGACACATTACTGCTCATAAACGACGACAGCTGTGTCGCGGACGCGCTTAACTTTCTCGTGTTCAGGGCTTTGAGTCGCAAAGGAGCGCGTGAGACCCGCAAAGCGCGTGCGCTGTAAGAACTAGGTCCAGAGATGGGGTTCAGCGCCTGCACGGAAAAAGTTAAAGCACGCCAGACTTAAACGGAATTCGGTTTCGTGTTCTAAGCCTTTAGAGGTATTCGAGAGGTTTTTACAGGTTCTGTGCTCTCAGTGTtacagcgccacctgctggccgACGCAGATCACGACCGGAAAGCAAATTACGTGCAATATATACTCTCTCCCTCCGAAGATTCGTTTTCGGTGTTTTTGCCATCGGATGCAAACGCATGCCGCAAAGTAGCCGTCGGTTCTCTTTAAGCAGGTCTACCGCGTCTCACAGAAGCCCGGTCCCTGGAGCCGAATTAGTTACGAAATCTCTGGAAACGATTAACGGCCTTCAGGCTCGACCGAACCTGTTAATACGAGCCGGACTTGACTGATCACCGCCGGCCAGACGttagaagaggaagagaagttGAAGTGCGTTTAATAAAAGGAACCCAGGTTCACTTCTGCTTCTGTCCGAGCTCCAGAACAACCACCAGAACGAATCCCACACAAACTGATCCAGAGTTCAATGCCGTCGCGAAATTGCAGACCATTACGGGTCTGTCCTGATTTTacatttctctcatttttgATCAGAAGACACCGAGACATGCCGATAGCTAAAAGCCTTTTTACAGCCTCTTTTCTTGGCCGTTCGATTCAATGTTTTGCGTAAAACTTCATGCAAACATGCGATTTAAGCTTAAAGTTCAGCAAGGCTAAACCTCTTGCGTTTGGTTTCTCGGAAAAACGTGAGAAATGTCATTGAAATGCGCCTTCATTGCATCTATTCGTTTGTTGCACAGCGTCGAAAACAGGGCCGCGATCCGGGCCCCGCTTCTCACGGTCGTCGCGCCCAGATCCGTCATCCGTCTGTAAACACCGGTTCTGAGAAGAGGTTTTTACAGGAGCGGATTTACAGACCGCTATCTGTCAGCTTTTATTGTCATCACGTTCTGCTTTACGGCGCCGAAGGACCTTTGGCCCCTCCAAGGTCCTCCAGGTCATTTCCGAACTTCTCGGGCTTTCTGAAACCGATTTATTGAACTCGAGCCACCTGCGGATTCTTACTGTAATTCTTGCAGGATTTTACTGTAATTCCAGCCGATGTAAAGCTCGCCGAAGCGGCCACCTCAGGAGGGACGAAGCTTTTCTCTCAGACCAGGCTGATTTTGTTTGTTCACCGCTGGTTGTTCATTAACACTCAGAGACACACCTGAGCGCGCATTTCCTCTCCAGGTTCCTGTAAAAACGCAGAAAGCTCTCGGCGCGTGATGTTTGCTGGAGGACCTTTCTGATGGAGCGGCGACTGCGGCGTTGAGCTGAGCCGAGGATGTTGGGttggttctggttctggttctggttgGGCTCCGCGCTCTGCGTCTCCGGGTTCGACGTGTTGAGCTGCAGGAACTCCTCGGTCACGTTAAACGTGGTTCTGCTGGAGGACGAAGATTCGCCCTGGAGCCTGAAGTTTGTCAAAGACGTGGTGGAAATGGCTGTCGAAGCGGAGAACGAAAAAAACCTGGACGAAGGTCTGGACTTCCAGATCAAGGTTCTGTTCAGCGGCTTTAACACGACGCATTACCGGCGCAGGGGCTGTGACAGCAGTACGTGTGAGGCCGTGGAGATCCTCAAGTCTCTGCATAACAGCAGCGAGCTCGGATGCATGATGCTGGGTCCGTCCTGCACGTATGCAACGTTTCAACTGGTTGAtcagggGGTGGGTTTGACTCTGACGATCCCCATCATCTCAGCGGGCAGCTTCGGGCTTTCCTGCGACTACAAGGACAAACTCACCCGGCTGCTCCCCCCGGCGCGCAAAATCTCAGAGTTCTTCGTCCACTTCTGGAGCGCATCCTTCGCCAATCTGAAACCCGCGTGGAAGACGGCGTACATCTacaaaaaaatcaacaacaCGGAGGCGTGCTTCTGGTTCATCAACGCTCTGGAAGCGCCGTCTGCTTTGTTCGCCTCCAACGTCTCCAGAGAGATGCTGAGGAGCCAAGGAGACCTGGATGAAAAGCTGAAAGATCAGGACCGCCACAGCAACATTTTTGTCCTGTGCGGGACACCAGACGACGTTCTCGCCATCAAGAAAAACACCACCATTCCTTCGCATGTGGTCTTCGTCCTGATCGACCTGTTCAATGATGGTTATCACACCAACGAGTCCAGCTTCGAACACATGCGGGACGTGCTGGTGGTCACCATGCACAGCTTCAGAAACTACTCTAGACACACGTCCTGGAGGACGAACGCGACGGCGCTGAATGATTATGTCGTGGCTTACCACGATGCCGTGGTTCTCTTCGGCGACATGATGAGACAAAACCTGAAGTCGATGAAGCAGCAGCCGTCCAGCGGCGGCATTGACCAGCCCTTCAGAAACATGAGCTTCGAGGGCATGGGAGGACACTATGAACTAGACGCCAGCGGAGACCGAGATCTCAATCTGTCTGTGGTTTACACAACCAGCTCATACAAGTATAAGACGCTGTTCGTCTTCAGCACGGCTCTGAACGTCACCCGGGTCAATCACACGGATCCTGACCTGCCGTGGGATGGCTCGCAGCTGCCCAGCGATAGGCTCAAACACGGGATGGAGACTCATAACATAGTCATGATCGTTCTCGGGATCAGTGTGGTCATGGCCACTGCCATCGCTTTCATCTTATACAGgcaGAACAGGAGGGTGCGTTTCAATCAGAAGAAATGGTCTCACATCAACCCCACACTCATCATACTGCTGGAGGACAAAGAGAGGAACCAGATCAGTCTGACTatCGATGAGGAGAACAAGGGCGACAACAGCGTCCTGATACACAAGGGCCGATATGataaaaagCCCGTCATCCTGAAGGAGTTGAAGAACACAGATGGAAACTTCTCTGATGACCAACGCATCGAGCTCAATTCTTTGTTGCGCATCGATTATTATAATCTGACGAAGTTTTACGGCACGGCGAAGTTCGACTGTGGTGTTTTCGGTGTGTTTGAGTTCTGCGAGAGAGGGTCGCTGCGGTACGTGCTGAACGATAAGATCTCGTATCCTGACGTGAGTTTTATGGATCTGGAGTTTAAGATCTCAGTCATGTACGACATTGCaaagGGCATGTCGTACCTGCACTCCAGTAACGTTGGCGTTCACGGCCGGCTGAAATCCACCAACTGCGTGGTGGACAACCGCATGGTGGTGAAGATCACCGACTTCGGCTGCAACACCATCCTCACACCCGGGAAAGACCTGTGGACGGCGCCGGAGCACATGCGTGTTCAGGGGATTTCTCAGAAGGGTGATGTCTATAGTTTCGCCATCATCTCGCAGGAGATCATCCTCAGGAAGAACCCTTTTCACACCTGCTGCTGCTCCGATACGGCAGAGAAATTGTATCGCGTTCAGTATCCGCGGGGGCCGAATGTCTTCCGACCCGATCTGAGTTTCGAGTCTGTTGGAGAGACTGAAGCAGAGCTATTCGTGCTGATCAAGAGCTGCTGGGAGGAAGATCCGGAGAAGCGTCCAGACTTCAAGCGGATCGAGGGCGCTCTGGGGAAGATCTTCAGcAACCTTCACAACCAGGCCAATGCCAGCTACATGGACAACCTGATCCGCCGACTGCAGATGTACTCGAGGAACCTGGAGCACCTGGTTGAGGAGAGGACAGCTCTGTATAAGGCTGAGAGAGACCGAGCCGACCAGCTCAACTTCATGTTGCTCCCGggGCCGGTGGTTCGCTCTCTGAAGGAGACGGGCCGTGTGGAGCCAGAGCTGTACGATGAGGTCACCGTCTACTTCAGCGATATTGTGTGCTTCACGACCCTCTGCCATCACAGCACTCCCATGGAGGTGGTGGACATGCTCAACGACATCTACAAGAACTTCGACAGCATTCTTGACCATCATGATGTCTATAAGGTGGAGACCATTGGCGACGCGTACATGGTCGCGTCCGGTCTGCCAAGACGCAATGGGAACAGACATGCTGTAGACATTTGTCTTATGGCTTTAGACATCCTGGAGTTCATGGGGACGTACCAGCTTAGACACCTGCCGGGAATCCCACTGTGGATTCGTATCGGGATCCATTCAGgtccATGTGCTGCTGGTGTGGTGGGTAATAAGATGCCACGTTACTGTCTGTTTGGAGATACGGTCAACACGGCGTCACGTATGGAGTCTACAGGCCTACCTCTGAGGATTCATGTGAGCGAGTCGACCATTAAGATCCTGCAGAGAACCGACTGTCAGTTTGAGTGTGAACACCGAGGAGAAACGTACCTGAAGGGTAAAGGGAAGGAGATGACTTACTGGTTGACTGGAGTCACCGGGCAGAAATACAACCTGCCAACACCACCAACAGCAGAGAATTTCCAGCGACTGCAGCAGGATCTGGCTGAGAGGATCGTCTCTACGCTGGACCAACGGGGCAACGAACGGCGCAAAACTCTGTCCACGCGCCAGCGGAGAACACAGAGACACAGCAGCGAGGGGCAGCCCGAATACCTGCACCTGACCGACCCCACCACATACCTGTagaaaacacactctctctctcacacacacatctgtatgTATTTAACTCTATTCCTAAAAACTCTTTTGATTTGGTTGCTCAGtctatcatttattcattctgaaTGCGTGCTTATTGTAATATGAATGATGTATATAATGTGCAATATGA

Function

GO: NA

KEGG:

id description
K12320 GUCY2C; heat-stable enterotoxin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24056 lncRNA downstream 8617 1654314 ~ 1655048 (-) True G16184
TU24034 lncRNA downstream 16049 1617248 ~ 1647616 (-) True G16170
XR_006248054.1 lncRNA downstream 75236 1586841 ~ 1588429 (-) True LOC122330691
TU24024 lncRNA downstream 84705 1565193 ~ 1578960 (-) True G16161
TU24015 lncRNA downstream 105824 1557402 ~ 1557841 (-) True G16159
TU24062 lncRNA upstream 42130 1722329 ~ 1929713 (-) True G16189
TU24071 lncRNA upstream 47134 1727333 ~ 1942095 (-) True G16192
TU24086 lncRNA upstream 96115 1776314 ~ 1779027 (-) True LOC122330697
XR_006248055.1 lncRNA upstream 96692 1776891 ~ 1778302 (-) False LOC122330697
XR_006248082.1 lncRNA upstream 116513 1796712 ~ 1797755 (-) True LOC122330758
XM_043227402.1 mRNA downstream 52815 1607064 ~ 1610850 (-) True LOC122330436
XM_043230346.1 mRNA downstream 77154 1585711 ~ 1586511 (-) True LOC122332889
XM_043226764.1 mRNA downstream 77958 1582088 ~ 1585707 (-) False LOC122329992
XM_043226756.1 mRNA downstream 77958 1582088 ~ 1585707 (-) True LOC122329992
XM_043226343.1 mRNA downstream 112878 1538691 ~ 1550787 (-) False zmp:0000000896
XM_043227727.1 mRNA upstream 6968 1687167 ~ 1691179 (-) False csdc2b
XM_043227736.1 mRNA upstream 6968 1687167 ~ 1691179 (-) True csdc2b
XM_043227464.1 mRNA upstream 11120 1691319 ~ 1694052 (-) True polr3h
XM_043227468.1 mRNA upstream 11120 1691319 ~ 1693638 (-) False polr3h
XM_043227313.1 mRNA upstream 22368 1702567 ~ 1707644 (-) True tefb
TU24042 other downstream 11299 1620964 ~ 1652366 (-) True G16172
XR_006248017.1 other downstream 480077 1164316 ~ 1183588 (-) False LOC122330455
TU23864 other downstream 510905 1147589 ~ 1152760 (-) True G16054
TU23858 other downstream 518148 1143803 ~ 1145517 (-) False LOC122329780
TU23851 other downstream 548963 1109491 ~ 1114702 (-) True G16048
TU24079 other upstream 108046 1788245 ~ 2000140 (-) False zc3h7ba
TU24082 other upstream 108046 1788245 ~ 2000140 (-) False zc3h7ba
TU24084 other upstream 108046 1788245 ~ 2000329 (-) False zc3h7ba
TU24091 other upstream 166924 1847123 ~ 1850109 (-) False LOC122333107
TU24085 other upstream 304398 1984597 ~ 2000140 (-) False zc3h7ba

Expression Profile