RNA id: TU417219


Basic Information

Item Value
RNA id TU417219
length 314
lncRNA type intronic
GC content 0.41
exon number 2
gene id G303005
representative False

Chromosome Information

Item Value
chromosome id NW_019172835.1
NCBI id APWO02000053.1
chromosome length 1257710
location 345058 ~ 345622 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aacacacactaacacctcatacaccaccaccatgctaatcactgctaatcactgctgtatctgatccactcactgtaccaccagctcaacactcactaacacctcatacaccaccaccatgctaatcactgctaatcactgctgtatctgatccactcactgtaccaccagctcaacactcactaacacctcatacaccaccaccatgctaatcactgctaatcactgcagtgctgagaataatcacccgccacccaaataataataataataattatatctgataacaataaagtaataaagtaaatatgtgT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417202 lncRNA downstream 33533 310070 ~ 311525 (-) True G302995
TU417171 lncRNA downstream 122151 222675 ~ 222907 (-) True G302977
TU417167 lncRNA downstream 127391 217381 ~ 217667 (-) True G302974
TU417164 lncRNA downstream 193960 150439 ~ 151098 (-) True G302971
TU417114 lncRNA downstream 219586 116154 ~ 125472 (-) True G302956
TU417192 lncRNA upstream 15252 360874 ~ 375179 (-) True G302990
TU417197 lncRNA upstream 35325 380947 ~ 400259 (-) True G302991
TU417093 lncRNA upstream 68339 413961 ~ 426599 (-) True G302955
TU417094 lncRNA upstream 68339 413961 ~ 426599 (-) False G302955
TU417099 lncRNA upstream 68339 413961 ~ 426599 (-) False G302955
XM_022665556.1 mRNA downstream 274172 66206 ~ 70886 (-) True LOC103046750
XM_022665544.1 mRNA downstream 285556 43903 ~ 59502 (-) True LOC111191239
XM_022665543.1 mRNA downstream 313955 12863 ~ 31103 (-) True LOC111191238
XM_022665539.1 mRNA upstream 18948 364570 ~ 376040 (-) False LOC103045831
XM_022665540.1 mRNA upstream 18948 364570 ~ 376040 (-) False LOC103045831
XM_022665538.1 mRNA upstream 18948 364570 ~ 376040 (-) True LOC103045831
XM_022665537.1 mRNA upstream 103515 449137 ~ 465932 (-) True LOC111191234
XM_007236634.3 mRNA upstream 268842 614464 ~ 625347 (-) True LOC103034629
TU417066 other downstream 284916 16646 ~ 60142 (-) False G302937