RNA id: TCONS_00012294


Basic Information

Item Value
RNA id TCONS_00012294
length 4945
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_006299
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 51710725 ~ 51731298 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGGCTTCACCGGAGGAGCTGCGGGCCGGCTCCCGGCTCCCGGTCACCGTCGAGCAGATCCTCAACGACACGCTGGTGGTGACGCTCCGCTACCGGGAGAAGAGCTTCACCGGGATCCTGCTGGACTGCAGCCGAAAGACTGGGCTGTTCTGCCTTCCGGATGTGGTCGGGAAAACCGAAGAGCCGCTCATCTTAAGACCGGACTGTGAAGTCTTGAGCGAAGAGTCTTCTTCTGAACCTGTCAGTCAGCCAACACAAAGACCAAAAGATGAAAACACGGAGCCTGAGGAGTCTCCTGCTCCTGTACCCATCCCGCTGCAACCGGGACAGCACACGTACCCACCTTACTTCGAAGGtgctcccttccctcagcccatATGGGTCCGGCACACGTATAACCAGTGGGTTCCTCAGCCACCGCCGCGCCCCATCAAGAGGAAGAAGAGACGCAGCCGAGACGCCGGCCGGCTGGCAATCAGCACCATCCGACTGCGACCCCGGCAGGTGCTCTGTGAGAAATGCAAAAACACACTAAACAGTGATGAGGACAGCAAAGATGGACCAACTCTACCCAAGACGTCCAGGAAAGAAAACTCACCTCATGCTGAAGACGACAACACTAAAACAACTTCAGCCAAGAGGAAGGACGACGGGGAACACAATAATAGAGAGTCCAAACGGAGAGAGGACTCAACCGTCTATGACGGCAAACGCTTCCGAAAGGATAAGAAGGAGGAAGAAAAGTTTCCTTCAGGCGACGTCATTCCCCACAGTCCAGTCATCAAGATCTCCTACAGCACTCCGCAAGGCAAAGGCGAGGTCATGAAGATCCCTTCCAGGGTCCATGGATCCGTCAAACCTTTCTGCCCCAAGCAGCTCCTCCAGAACGGACATGGAGATCGAGATTCTTCCAAGGAAACCCCTAAAAAACTACAACCCCCAATGGACGCAATACGAACAGGTCTTACCATTTCCATTCCCAAACTCAAGCTTCCGAAGTTGCCTAGTCCTGATGCGCAGTCGCCTAAGATTCGCTTGCGCTCCCGGGCGGAAGGAGCGGAGCAGATGTCTGTATATGAGGCAGAACTCGTGGACGGAGCTCGGAGGAGAAGTCCGAGAGTTCCCAACTCTGGTTTACCTCAATCCGAGGATGCTGAAGATAAGAATTCACTAGAACTTTGGTCGGGGAGCTGCGGTGGGGAAGTCGAGCGGCACGGAGATCTGACTTTACTAATTAACTTCCGCAAGAGGAAAGCAGACTCTTCCAGCCTTTCTGTGTGCAGTAGTGACAGTCTAGACGAGTCCAAATCGTTCAGTTCGGATGGCACGTCTCCGGAGCTGTGTGATCTGGCTCCAGGCGATGATATCTCTGTGTCTTCGTCCTCTCAAGGAGAAGGCAAGACGGTTCCTCCGCTGACTGTCCGCCTGCACACGCGCAGCATGAGCAAATGCGTGACGGAGGATGGTCATGCGGTGACGGTCGGGGACGTAGTTTGGGGAAAGATTCACGGCTTCCCTTGGTGGCCGGCTCGGATCCTCAGTATTAGCGGGACTCGCAGAGAGGACGGAGAAGTCGACGCTCCGTGGCCTGAAGCGAAGGTTTCTTGGTTTGGATCTCCGACCACCTCTGAACTCTCAGTTGCCAAACTGTCACCGTTCCGCGAGTTCTTCAGGTCACGCTTCAACCGCAAAAAGAAAGGGATGTACCGGCGTGCCATCATGGAAGCTGCCAAAGCGGTGGGACACATGGGTGCAGAAATCACATCTCTTCTGGCTCACTGCGAAACTTAGatctggagGCCGGCAGTGGACTGTCTGTTGTTCAGCGCTCTGCGGACGCTCCCGGTGTGTGTGTTGATCTCCCAGGACGGAGAACACCTTCATTTTGCCACGGATATCATGAGGGAAGGTgcttttccacacacacacacacacacacacacgcacacacacatacacacacgcacgcctCACCTGACTGTTGAAGACGAGGTGTGACCTGTGGACTGCATTACAGACGGACCATGAGGACGATCTGGGAAACACCTTCTGTTGGTCTCTCCATCTTTCATTGGTTTGTTTTTAGGACGTACGTTATATTAGAACAAGTAGCTCGACACTAAACTCCGAATGTATTTATTcacctgaaaaaaacaaaacaaagacaaaaaacaagcaaacaaacactcgCCCAGTGACTTTCCTGAACTCCAgatcacacacactgctgctgtttCTCCAACTGATGGATCTGCGTATTACAACACTTAAACGACGAGTCTTaccgcctgtctgtctgtctgtctgtctgtccagatgatgaaaatgtgaaattccttctctgtgtgtgtgtgtgtgtgtgttgtgtaggtCTTGCACCATGCAGTATGTCCGTTGTTTTTCTTCCTCTTCTCTCCTTTTATTACGCTCTGATCATGTGATTTttgctttaattatttaatgagtcaCGTTAAGAGAAGCACTTTATCCATACCTTGGTGGCCTGCTGTGAAGATTGCAGCGTCTTTGAGGAGCTGACCCaagtaatttctattttattttcatttattttatctttcaattATTCTGATGCAGGTTTCCGTTGCAGGacatgtgcgtgagtgtgtgtacaCTGTAAGCCACCGTCGCTGGTTCCTCCTTAAATGATGACACAACTGTgtgcactgtctctttaagaaagcatcagaagtgtgtgtgtgtgtgtgatgaatgaATGCAGGTGTTTTGGGCTCCGTCTCGATGCTCTCTGACTGCTGTTTTTTCCAGCTGGACTCTGCAGGCGTCGAGGGCTTTATATCGATCTCCCACTGCGCACCGGTGGGCTTTTTTTAATGTGctgtaaatagaataaaaatataaaacaacatcCTCTCTGTCTTCTTCTGCCCCTCATTCCCCTCCGAAAGCTGCTGATTATGTGTGTGGAGATACTTGCATTAATATTATCTTTTCATTACATAAATATTAGTGCATGATTATTATATTGTTTGTCTGTAAATGAATGCACTGCGAACGGAAAAAAGCTACTTTACTATGCATTTGGAGCATAGTTTTTACTAACGGATATCACAGTTAAagactagtctagagcgccatctgctgcagAAGctagtgtaaccccgccggtcctacgccacccaacccgctccgagctggtttcgaactagcgaccttccgcatgggagtcggttgctctaacaaggaggctaaagaccatggcctctagcatctgtcgctagagcaccttttttaaagatcagaggagtgaggtttacctgcacagcacacactagctggcctccgttacactagcTTAGAGTTTAGATGGTTATAGTTATACATCATCTGCTGCTAAATTAGAGAATTAAGTGGATGAGTTTTGCAGTATATGATATAGCTCAGAATAACACACGAGCAAAAATGCAATTTtccatcattttcattttatttttatatatttttaatttatttacagttgaagtcagaattattcagctctctgtttattttttcccccaatttctgtttagcggagagcagatttctccaacacatttctaatcataacagtgttaataactcatctctaataactgatttatttcctctttgtcatgatgacagtaaataatattagactaaatattcttcaagacacttctatacagcttaaagtgacatttaaaggcttcactagggtaattagggtaactaggcaggttagggtaattaggcaagttattgtataacgatggtttgttctgtagactatcgaaacaaataTGCttagtaatattgaccttaaaatgctgtttaaaaaattaaaaactgcttttattctagccaaaataaaacaaatcagactttctccagaagaactaatattatcagacacactgtgaacatttcctgaatctgttcaacatcatttggaaaaattaaaaaaattaaattaaattaaaaaaatcaaaggggccgaataattctgacttcagctgtaaataTAGGCAATTGTATATAAAGTGTTTTATTCTTATACTGGTTAATGTTATCTTTTCTCTTTGTTTTTATACAGCAGTTTGACATGTTGTTTTTGCGATGCTTTGCAATTTCAAACTCAGCCCAAGCAGAGCACTGATGTGCGTGTGTGGTTTAATGTCCATATTTTATATCCACAGTTCTGTTTTATATcaaggcagttctgtgggcgcaaatgccttgttgatgaggccagaggagaatggccagactggttccagctgatagaaagcctacctgagtattgctgctgaccatgtccatccctttatgagcacagtgtctccatcttctgatggctacttccagcaggataacgcagcatgtcataaagctcaatcatctcagactggtttcttgaacatgacgatgagttcactgtactcaaatggcctccacagttaccagagctcaatccaatagagcagctttgggatgtggtggaacgggagattggcatcatggatgtgcagccgacaaatctgcagcaactgtgtgatgctatcatgacaatatggagcaaaatctctgaggaatatttccagcagcttgatgaatctctgacaccaaggatcaaaacagttctgaaggcaaaaggggtccgacCTGaaattagtaaggtgtacctaataaagtggccggtgagtgtgtgtgtatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtcctctccACCATCTGCTTGTCCTCCAGCAATGATTACACAGGCTAATGTTCCTCTCAGGTGTGTGTTCAGAGTCTCCAGGTGTTTGTGAGTTTCCCTCCAGCATTATTTATCTACAGTCAGTGTTGTGGGAAATGCATTACAAATAATGTGACTTACCTTAATTATATGACTTCTCTAGTAACGAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110930-2 Orthologous to human PWWP2B (PWWP domain containing 2B).

Ensembl:

ensembl_id ENSDART00000163741

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013701 lncRNA upstream 85158 51617783 ~ 51625567 (+) True XLOC_006298
TCONS_00013700 lncRNA upstream 248058 51456491 ~ 51462667 (+) True XLOC_006296
TCONS_00012291 lncRNA upstream 253748 51445949 ~ 51456977 (+) False XLOC_006296
TCONS_00012292 lncRNA upstream 253748 51452808 ~ 51456977 (+) False XLOC_006296
TCONS_00012290 lncRNA upstream 258063 51445949 ~ 51452662 (+) False XLOC_006296
TCONS_00013702 lncRNA downstream 10256 51741554 ~ 51767383 (+) False XLOC_006300
TCONS_00013441 lncRNA downstream 10397 51741695 ~ 51795401 (+) False XLOC_006300
TCONS_00013703 lncRNA downstream 10432 51741730 ~ 51774396 (+) False XLOC_006300
TCONS_00013704 lncRNA downstream 10482 51741780 ~ 51774449 (+) True XLOC_006300
TCONS_00013442 lncRNA downstream 122504 51853802 ~ 51865510 (+) False XLOC_006301
TCONS_00012293 mRNA upstream 126461 51579851 ~ 51584264 (+) True XLOC_006297
TCONS_00012282 mRNA upstream 688854 50778187 ~ 51021871 (+) True XLOC_006287
TCONS_00012278 mRNA upstream 1332687 50375800 ~ 50378038 (+) True XLOC_006279
TCONS_00012277 mRNA upstream 1337704 50368668 ~ 50373021 (+) True XLOC_006278
TCONS_00012276 mRNA upstream 1538760 50151407 ~ 50171965 (+) True XLOC_006277
TCONS_00012296 mRNA downstream 122418 51853716 ~ 51881759 (+) False XLOC_006301
TCONS_00012295 mRNA downstream 122418 51853716 ~ 51881759 (+) False XLOC_006301
TCONS_00012297 mRNA downstream 137727 51869025 ~ 51881011 (+) True XLOC_006301
TCONS_00012298 mRNA downstream 225099 51956397 ~ 51963460 (+) True XLOC_006302
TCONS_00012299 mRNA downstream 250466 51981764 ~ 51988216 (+) True XLOC_006303
TCONS_00012285 other upstream 607866 51102744 ~ 51102859 (+) True XLOC_006290
TCONS_00012284 other upstream 709547 51001059 ~ 51001178 (+) True XLOC_006289
TCONS_00012283 other upstream 916853 50793756 ~ 50793872 (+) True XLOC_006288
TCONS_00012281 other upstream 1108011 50602639 ~ 50602714 (+) True XLOC_006286
TCONS_00012280 other upstream 1189125 50520668 ~ 50521600 (+) True XLOC_006285

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU801057 False 3232 lncRNA 0.51 3 CI01180000 2877311 ~ 2889630 (+)