RNA id: TCONS_00013441


Basic Information

Item Value
RNA id TCONS_00013441
length 1381
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id XLOC_006300
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 51741554 ~ 51795401 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTTCCATTGGCTTCGTGACGTCAGAGCGGCGCAGGGCTCTCCAGCAGCGGCGTGTGTGTCTTTCCTCGGCAAACGCGAGCAATGCGCGCACGGGAGAACCGAACGCCTGCGAAACCCGCTCCGCACAACAAGGATTACACCGGGGAACGCTTCCAGTCATGGCGGAGCAGTGAAACGGACGCGTCGAGGAAAAACGCGCGCTGATTCTGCGTACAAGACGCGCAGGAGCATGCAGGAGCCCAGCTGATCTAGACTCGAACCCCCAGCGTTTTGACCCCGACAAACACTACAGCACGACTACACGCAGCGCTCGCGACACAGAAAGCTCATCAATTTAGCTAATTAGTGTCTCCGCGAGCTGGTTAATGATGGCGGGGAAGCTGACGGCGGGCGCGGGAATACTGCTGGTCACCGCCAACGTCGGATCGCTGTTTGAAGATCCGGAGAACCTGCAGAAGACGTGGCTGCGCGAGTTCTGTCAGacggTTCAGTCTCACCGGCCGCAGTTCGTGGCTCTGCACTGTCAGGAGGTCGGAGGGAAAAACTACGAGGCGTCGATGACACACGTGGACAGCTTCATCAAagaGCTGCTGTCCAGCGACGCTATGAAGGACTTCAACCGAGTGCGGGTTTACCTGGACAAGAACTACACATCGCAGGAGCAGTTCACAGTgagtcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcagcatcATCTGGATGAGCAGATTCACTGTAGGAACACTAGAGGGCGACACTGCCTTTATTTTAATCATCTGCTCAGATCGGGCTTACAGACTTTTCTTGTCAAACattgtagatgtgtgtgtgtgtgtgtgtgtgtgtatatagttgaATTTACAGACAATATCCTCGGCTATATCGTGATTTATGATCTATCATAATGAATATATGAGAGGGCTtatatattgcatattatattCAGTATTATGTGTTGGTTATGGAGGATTTTGAGATCTGCTGGTTGTTGCTGATGGTAAAACACAGGTTTTGTTTATAACATTTACCTGCTGTTTACTCATGATGATGATCTCCTGTAGTAAACTTCTGCTCTGTCTTCATCACTTCTGAATGATAATCATAATATTTGAGGTCATGAACATGTTATGTCTGCATAACACCAGGTTTGGACTGAACTTGTAATCTCATTAaagcattatgttttttttttttatgaggacACGAGAAGACTTTTTTTATACTTATGAAAGATATAGTTAAAAAATGAAAcgggatagatagataaattgatagatagacggatggaaggatagatagatggacagacggatggactgatggatggatagatagattaatgaatggatggatggac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013701 lncRNA upstream 116128 51617783 ~ 51625567 (+) True XLOC_006298
TCONS_00013700 lncRNA upstream 279028 51456491 ~ 51462667 (+) True XLOC_006296
TCONS_00012291 lncRNA upstream 284718 51445949 ~ 51456977 (+) False XLOC_006296
TCONS_00013442 lncRNA downstream 58401 51853802 ~ 51865510 (+) False XLOC_006301
TCONS_00013443 lncRNA downstream 325436 52120837 ~ 52136375 (+) True XLOC_006307
TCONS_00013705 lncRNA downstream 374548 52169949 ~ 52173258 (+) False XLOC_006308
TCONS_00013706 lncRNA downstream 374548 52169949 ~ 52173802 (+) False XLOC_006308
TCONS_00013444 lncRNA downstream 376740 52172141 ~ 52174571 (+) False XLOC_006308
TCONS_00012294 mRNA upstream 10397 51710725 ~ 51731298 (+) True XLOC_006299
TCONS_00012293 mRNA upstream 157431 51579851 ~ 51584264 (+) True XLOC_006297
TCONS_00012282 mRNA upstream 719824 50778187 ~ 51021871 (+) True XLOC_006287
TCONS_00012278 mRNA upstream 1363657 50375800 ~ 50378038 (+) True XLOC_006279
TCONS_00012277 mRNA upstream 1368674 50368668 ~ 50373021 (+) True XLOC_006278
TCONS_00012296 mRNA downstream 58315 51853716 ~ 51881759 (+) False XLOC_006301
TCONS_00012295 mRNA downstream 58315 51853716 ~ 51881759 (+) False XLOC_006301
TCONS_00012297 mRNA downstream 73624 51869025 ~ 51881011 (+) True XLOC_006301
TCONS_00012298 mRNA downstream 160996 51956397 ~ 51963460 (+) True XLOC_006302
TCONS_00012299 mRNA downstream 186363 51981764 ~ 51988216 (+) True XLOC_006303
TCONS_00012285 other upstream 638836 51102744 ~ 51102859 (+) True XLOC_006290
TCONS_00012284 other upstream 740517 51001059 ~ 51001178 (+) True XLOC_006289
TCONS_00012283 other upstream 947823 50793756 ~ 50793872 (+) True XLOC_006288
TCONS_00012281 other upstream 1138981 50602639 ~ 50602714 (+) True XLOC_006286
TCONS_00012280 other upstream 1220095 50520668 ~ 50521600 (+) True XLOC_006285

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU801369 True 755 TUCP 0.54 5 CI01180000 2771047 ~ 2851916 (-)