RNA id: TCONS_00012771


Basic Information

Item Value
RNA id TCONS_00012771
length 1063
lncRNA type antisense
GC content 0.44
exon number 7
gene id XLOC_006620
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24602410 ~ 24606627 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTAGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCTTCAACTGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTGGCACACTCATTTGtttcctTCCAGGCACAAGCATATGGTGATCAATCCACACATTCCATAATCCCAGCaataaaagattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCAGAAGATGATATAACATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATCGCTAAGACAACAGTGGCCAGAGTTCTTTGACATACCCAATTAGCACATATCATAGAGAGACAGGTGTTTGCTGAGTTTAATAGAATCGCCAGTAAGAATCTTGAGGGAGACTTCTTTGAGGCTCTGGACCAGTATGCCCCACGTTTCATTGAACTTTTCAAAACAAAATAGGGAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATGACACCAGACGACACAGTACTTCGCTCTGTTGTCCTCAAAGGCATTCCCATTTTACTCGATGATGACTCCAGTGAATTCTACAAGACTTGCTCTGATACAGAGAGAGACGAGGCCCTAGAATGCATCACTGTAGTCCTCACGAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGGTATTCTCATGGATCATGTTAAAAACTTGCCTCAGGCAGTTTGTCCTTTGTTTGGTCTTACATATGCATTGCATTTGGATACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTGGACTGGTAAAGAAAAACCTCCCACCAAAACTGTTAACTCCTGAAGAACAGTCTTCTGGGTTAGAACAGTAAAGAGCCATCGGCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCTCTTATCAGAGAAAGTTTGATGCTTTCATGGAACTGTTCTCGCTTATTTACGTtctcaatgg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:1902299 pre-replicative complex assembly involved in cell cycle DNA replication biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0036388 pre-replicative complex assembly biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0044786 cell cycle DNA replication biological_process
GO:1902969 mitotic DNA replication biological_process
GO:0006457 protein folding biological_process
GO:0033260 nuclear DNA replication biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0000727 double-strand break repair via break-induced replication biological_process
GO:0006267 pre-replicative complex assembly involved in nuclear cell cycle DNA replication biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0042555 MCM complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000148228

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012770 lncRNA downstream 14190 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013787 lncRNA downstream 24388 24577265 ~ 24578022 (-) True XLOC_006617
TCONS_00013786 lncRNA downstream 27664 24573086 ~ 24574746 (-) True XLOC_006616
TCONS_00013481 lncRNA downstream 250867 24346989 ~ 24351543 (-) True XLOC_006611
TCONS_00013785 lncRNA downstream 1191851 23408669 ~ 23410559 (-) True XLOC_006597
TCONS_00012780 lncRNA upstream 180332 24786959 ~ 24791265 (-) False XLOC_006624
TCONS_00013790 lncRNA upstream 603531 25210158 ~ 25214454 (-) False XLOC_006629
TCONS_00012796 lncRNA upstream 614548 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012801 lncRNA upstream 866579 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012804 lncRNA upstream 872019 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012768 mRNA downstream 154132 24429918 ~ 24448278 (-) False XLOC_006615
TCONS_00012769 mRNA downstream 155078 24431989 ~ 24447332 (-) True XLOC_006615
TCONS_00012766 mRNA downstream 173315 24421515 ~ 24429095 (-) False XLOC_006614
TCONS_00012767 mRNA downstream 173344 24425081 ~ 24429066 (-) True XLOC_006614
TCONS_00012764 mRNA downstream 206211 24381344 ~ 24396199 (-) False XLOC_006613
TCONS_00012772 mRNA upstream 58707 24665334 ~ 24669258 (-) True XLOC_006621
TCONS_00012773 mRNA upstream 94779 24701406 ~ 24717618 (-) False XLOC_006622
TCONS_00012774 mRNA upstream 95131 24701758 ~ 24717388 (-) False XLOC_006622
TCONS_00012775 mRNA upstream 100191 24706818 ~ 24717365 (-) True XLOC_006622
TCONS_00012776 mRNA upstream 136097 24742724 ~ 24745288 (-) True XLOC_006623
TCONS_00012759 other downstream 316020 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 475231 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012752 other downstream 641004 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012744 other downstream 1088607 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012725 other downstream 1743955 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012791 other upstream 452106 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other upstream 584949 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012805 other upstream 923907 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012810 other upstream 939049 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012832 other upstream 1960439 26567066 ~ 26567184 (-) True XLOC_006646

Expression Profile

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