RNA id: TCONS_00012773


Basic Information

Item Value
RNA id TCONS_00012773
length 4419
RNA type mRNA
GC content 0.38
exon number 12
gene id XLOC_006622
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24701406 ~ 24717618 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatttatataataaataggCTATTGTAATAATCTTTTATTGTTACTAGGTAATAAAAATAACAGCCATTTCAGtagtagtactactactactaccagtACTACTtctactataaataataataatcatcatcatcaatattatcattacttttttgtttgtttgtttctatgtttttCGTTTTATCCCAGATGgcgacttttattttgaaaggttGTTTGGGCAGATTTTGAAAGGGAATCTGTATCGGATTCACAAAGCGTTTCAGTGGGAACCTTCCAACCTACAATGTTGGGCACAGCGTCGTGAGTAAAAAGTAATGTCTTGCAAAAGTGAAGGGACGGCGTTGTCCGTCAACTGAACGAATGGTCTGTAAATGCTTCCTGCGGCTGCTGCTAGCTCCTCGTATATGTCGTTTAACTTGACAGAAGCTCGTTTTGCCACAAGGTGAGTGCAGACTGAGGGATAATGGCACATGTTGGGGCAGTTGTTGCTGCTATGGCCGGTCTAATGGCCATTCTGCTTCATTCTTCCATACACAAGATCGAGGAAGGACATTTAGCTGTGTATTACAGaggAGGAGCTTTGTTGACCTCTCCAAATGGCCCAGGTTACCATATAATGCTGCCTTTCATCACTTCTTATAGATCAGTGCAGACAACTCTGCAAAcagatgaaataaaaaatgtgccTTGTGGAACTAGTGGGGGTGTAATGATCTATTTTGACAGAATTGAAGTGGTCAACATGCTCATTCCAACCTCAGTGGTGGATATAGTGAGGAATTACACTGCAGATTATGACAAGACGCTAATCTTCAATAAAATTCACCATGAGTTAAACCAGTTCTGCAGTGTGCACACACTACAGGAAGTCTACATTGAGCTGTTCGACATAATTGATGAGAACTTGAAGACTGCACTACAGAAGGACTTGAATTGTATGGCCCCTGGTCTCACCATTCagGCCGTGAGAGTCACCAAACCTAAAATTCCAGAGGCAATCAGAAGAAATTATGAGCTCATGGAAGCAGAGAAGACCAGGCTGCTCATCACCGTTCAGACACAAAAAGTGGTGGAAAAGGAGGCAGAAACTGAAAGAAAGAAGGCCATCATAGAGGCTCAGAAAGTGGCTCAGGTGGCAGAGATTCAGTTCCAACAAAAAGTGATGGAGAAGGAAACTGAGAAAAAGATCTCAGAAATTGAAGATGCTGCTTTCCTGGCGAGAGAGAAGGCACGAGCAGATGCTGAATATTACACCGCTGCAAAATTTGCTGAAGCCAACACGCTCAAGCTCACGCCAGAGTATCTGCAGCTGATGAAGTACCAGGCCATAGCTGCCAACAGCAAGATCTACTTCGGTCAGGACATCCCAAACATGTTTGTAGACAGCAGTGCCTCCCGTCCGGCCGCAGGAGAATCCGAGCAGCTGGAGTCCTTGAGCATGAGAGAGAGTCTTAAGAAAGCGTCCAAGCCCAAAGCCTCAGAAGGCCACTGAAGGGCCTGAGATCTGTCCACCCCcttcttcctctctctctttctctctctctctcattctctgtcTCTTGTTTTGGGGCAGGGGTGCTTGTGAGGCATGCTGACATGGATATTTTCCCTCTTCTGCTGCAGTGGTGTTGGGTGCTTGGCTCGCTGAGGAGACTGACATACAGAGCCTTTGGTTTTCCAGCAGTCATTAGTGGACTAAATGGTAACGTCCAGCAATTGTGCTATTGATTATCGCCAGATTCGAAGCTAAAATGTTCCTGTTTCACATCAGCATGCTTTCTTCCCCCCTTTTTTTGTTGCTCAGCTTTCTCTTCTCTTTTACAGATCCATGCTAATTATTTGTTAGATGCAGATGCGTCTGCGTAAAGTATGTGAACATTTGGAGGTTCATCTTTTGTGTTGTCTTTTGAAACTGGAATTATAAGGCATCACACTAATTAGAAGGCAGTGAgtggcttaaagggatagttgacacaaaagatgttttgaagaaagctgaaaacatgtaaccaataacattccatagtaggaacaacaaatactatggaagtcagtggctaccaGTGTCCACCATTTTTTGGAACTCAAAAAGGTTTTcaacaagtaaatgatgattgagttttgcgtgaactatccctttatataTCTACAATATGATCAAACTCATTTTGCAGCCAAACTGTCATCTTCTTTTTTTCATATGTTGTTAAAGGGATGTTTCACTACACCTCTAAATAGTCATCATTTGTTCATCCTCAAAGCGGTGATGCTTTCTTTTGTGGAACATGAAAAGATAAACTACATTTttcaatatcttttttttttttgtccatacaGTGCAAACCAACAGTCTCCAATGTTGAACTTTGCTTGGATCACTTTGGTTTTAATTAAAtggacaaaaataattaaaaaataataactttgttTCCAAAATAAGTTAAATCCAGTCTGGAATGATGTGAGGATGAGTAAGCAATGACAATATTAAATGTTGGTGAGTAGTCCTTTTGCAAAAGTGCTCATGTCCATCATCACTAACTTGATAAGCACTAAAATCTTAATTTAGTTGAGCCAAGACTGCAAAGATCAGCGGCttttatatgttattaattaTAATTCTGATTATTATATGTTTGTAAGAATGATCTCATTTTAAAATCATCCCTTGCTTGAGTTTTGTTGGTCTTCAAGATGAAGATTTTTGACATCATTGACGCCTGAATACTTTTGTTGTGAATTGGATTTCATGTAATGTCAGAAATAGTGGGTTGTGGTATAGTGTTGTGTAGCATGTTCATTTGTGGCGGCCCTGTGGATTTTTCAAGTTGTTGGGTTCATACTGAACAGGGTTTCATACAATTTCAGATTTCATTTTCCAGGGCTTTGACAAGCAATGAGATTGGATTGCTTTCGGATGGTCGTGTATATATAGTGTAGTGACTAACAAATGCCTTTCTGACTTTAGTTGAACTTGTTTATTTGGTCATTACTGGAATGAGTTTATTTCAAAGGGAATTCAGTAACAATAAGGGCTGCTGTATTATTAGGCACTGTCAAACATTTAGCATTATGATGAGCGGGTGTTTATACTGAGAAGTGTCACCACTAGGGGAAGCCAGTGATCTTCAGGAACTACAAGAGTAGGCAACAAACAGTTAAAAAACGTTGTGGTTTAGCTTTTCTTGGAAGTTGTCAAATCTGTATAAGTTGCAGTCATATGCCAATAATAGCAATGCATTGCATCAAATCATTTCGAATAGCGTCTGTCAGTACTATCTCAGGAAAAGAGACCTGCGTGTTAACTTGAATGgcctgtttttttctttcttagaaAACAATATAAACTTGACTGAAATTTGAGTCGGGTgtcagtttgtgttgattgtgtGAATCTGTCACACGACATGTTGATTTTTCATCATTTGCAGACTGGTCGATTAAAGAGATGAGCACTGATTTAATACAGTTAGTCCGATTGTTGATGCTACATCCTGTTGCTTTTGCCATTTtcccttttaaagggatagttcacccaaaattctgtcatttacttgtgCTCCTAAttgagtttgtttcttcttttgAATACACAAATGAAGAAACACTGAGGAATGTTGAAATAAAACAGCCATTGAATtccataatagtttttttttttactatggatttCTGTGACTGCTTTCTCctctcaacattcttcagaatatcttgttttgtgttcaactgaagataGAAATTcctaaaggtttagaaccacttaaatGTGAGCAAATGATGAGGAAACGtcaatttttgggtgagctatcccttaaGTTTGACTTTATCCATGGTTTTGCTTTAGAGTGTGAATATGACTGTCTTAAAGCGATGTGTTCCCTGTGGTTGTTAAATGGAGAGAGGACAGACTTTGACTGCCCTGGAATAAACCCACTCTGTGAATGTCACTTTTTTATGTCAGCGTAATTTAAGCTcctaattttaaaacatttatatgcaaaatttataaaattttgaCAATGTTCAATTCTGTGAAATAAAACCTATTTTGATACCATGAAAACGACGCTTGTGTGATCATATTCCTTCACATTAGGGAAGTGCACTTCATGTCCTATTAAGGAAGTGTTTCACATAGCTTTATGTCATAGATTGTGTCACGATTAATTGTGTTGTAGTTTGGTTTGAGCTATTTTCCAAGAAATATAGAGGAATAGGAAATAGATCTCATCTTTCATATGTAAGAAGTGcggtataaaaatataaatttaagtatATGCCAAACTTGGCCCTTGGTTTTTGTTGCCTGCTTGACGGAGTGTGAGAAAGTCTCACTGTTGTTTGTGTATTTGACCCTAGACAATCAAACCAGTCTTAAGTTGCATGGGTTTATATAAGAGTAGCCAACAATGAAA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0008202 steroid metabolic process biological_process
GO:0032933 SREBP signaling pathway biological_process
GO:0008203 cholesterol metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-13 Predicted to enable cholesterol binding activity. Predicted to be involved in SREBP signaling pathway. Predicted to act upstream of or within cholesterol metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in liver. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 62. Orthologous to human ERLIN1 (ER lipid raft associated 1).

Ensembl:

ensembl_id ENSDART00000172156

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013788 lncRNA downstream 78181 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012771 lncRNA downstream 94779 24602410 ~ 24606627 (-) False XLOC_006620
TCONS_00013789 lncRNA downstream 94779 24604380 ~ 24606627 (-) True XLOC_006620
TCONS_00012770 lncRNA downstream 113186 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013787 lncRNA downstream 123384 24577265 ~ 24578022 (-) True XLOC_006617
TCONS_00012780 lncRNA upstream 69341 24786959 ~ 24791265 (-) False XLOC_006624
TCONS_00013790 lncRNA upstream 492540 25210158 ~ 25214454 (-) False XLOC_006629
TCONS_00012796 lncRNA upstream 503557 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012801 lncRNA upstream 755588 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012804 lncRNA upstream 761028 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012772 mRNA downstream 32148 24665334 ~ 24669258 (-) True XLOC_006621
TCONS_00012768 mRNA downstream 253128 24429918 ~ 24448278 (-) False XLOC_006615
TCONS_00012769 mRNA downstream 254074 24431989 ~ 24447332 (-) True XLOC_006615
TCONS_00012766 mRNA downstream 272311 24421515 ~ 24429095 (-) False XLOC_006614
TCONS_00012767 mRNA downstream 272340 24425081 ~ 24429066 (-) True XLOC_006614
TCONS_00012776 mRNA upstream 25106 24742724 ~ 24745288 (-) True XLOC_006623
TCONS_00012777 mRNA upstream 63570 24781188 ~ 24825691 (-) False XLOC_006624
TCONS_00012779 mRNA upstream 64946 24782564 ~ 24826607 (-) False XLOC_006624
TCONS_00012778 mRNA upstream 64946 24782564 ~ 24826607 (-) False XLOC_006624
TCONS_00012781 mRNA upstream 69498 24787116 ~ 24794486 (-) True XLOC_006624
TCONS_00012759 other downstream 415016 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 574227 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012752 other downstream 740000 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012744 other downstream 1187603 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012725 other downstream 1842951 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012791 other upstream 341115 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other upstream 473958 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012805 other upstream 812916 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012810 other upstream 828058 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012832 other upstream 1849448 26567066 ~ 26567184 (-) True XLOC_006646

Expression Profile

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