RNA id: TCONS_00012784


Basic Information

Item Value
RNA id TCONS_00012784
length 4107
RNA type mRNA
GC content 0.51
exon number 10
gene id XLOC_006626
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24871050 ~ 24880525 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGCTGAAGAGGATCTGAAATTGTTCAGACACGTCAAGGAGCTCACAGCTAAGAAAAATGGCGGTGATCAAGGACAATCCCCTCCTTTAATTGAGTTCGGGAAGTATGAAATACAAACTTGGTATTCCTCACCATACCCTCCTGAATACTTAAGATTACCGAAGCTTTATCTCTGCGAGTTCTGCTTAAAGTACATGAAAAGCCAAGACATTCTGCAGAGGCATTCAAAGAAATGTGGGTGGTTTCACCCGCCAGCTAATGAGATCTACAGGAAGGATAACCTCTCAGTGTTTGAGGTTGATGGAAATATCAGCAAAATCTTTTGCCAAAACCTTTGTTTGCTTGCGAAGCTCTTCCTGGACCACAAGACGCTGTATTATGATGTGGAGCCTTTTCTCTTCTACGTTCTAACACAGAATGACGAGAAGGGTTGTCATCTCGTTGGATACTTTTCGAAGGAAAAGCTTTGCCAGCAGAAGTACAATGTCTCCTGCATAATGATCATGCCTCAGTTCCAAAGGCAAGGATTTGGGAGGTTCCTCATTGATTTCAGTTACTTACTTTCCAGGCTAGAAGGCCAGGCTGGCTCCCCAGAGAAGCCTCTATCTGATCTGGGTCGTCTGTCCTACTTGGCTTATTGGAAAAGTGTCATACTGGAGTACCTGCACAACCACCCAGATAAGAGTGTCAGCATCAGGGGAATGAGCCGAGCCACGGGCATGTGTCCACATGACATCGCTACCACACTTCAGCAGCTCAACATGATTGATTTCCAGGATGGCAGGTTCGTAATCATCCAAAGACATCAGCTAATTGAGGAGCACATGGATAGGCTGAGAGTAAAGCCACGGCTACATGAGGTCGATCCTGACTGTCTGAGCTGGACTCCAGCTTTAGTCTGCAGGAGCCCACCAGTGGACCTGAAAAGTGCTTTGGCACTGCAGGCAAGGGACCATCGTGCAGACTATACTGCTTCAACCAGGAATTTGGCTATGGGGATGGGCTACATTGGCACAAGACCTCCGCTAACCAAGTGCAAGAACTTCAGAAGAAGATACTCAGACCCATTGTTTGGAAACAGCACTGGGAAAGACTTCGAAGTGAGTGAAGAAAGcagcagtgatgatgatgatgacaacaacgacgatgatgatgacgatgaggATGGAGAAGACAGCGCAGTTCAGTCCCAGTCTGGGCAGGGGCTTAAGCGAAGGcggGCACCAACTATGCGACGGAAGAGAGGAAGGAGAAGAACAAGAATTAACAGCAGTGTCACGACTGAAACCATCTTGGAAAGAACAGAGGTGCTAGATGAGCCATTTGAAAACTCTGACGTAGAAAGCCCTCTTCCAGAACATAGCAGGAGGTGCTGTAGTGAGGATGAGGAAGAGGAGAAGAGCCAGAGATCAGCTGTGTGTCGGCCTGGAAGACCAAGGACAAATGAAGAAGACAATCATTCAAATCAATCAAAAGAAGAAGAGAATGTTGAAGtGAAAAAGGACAATCCTCGACCTGCAAAACGGAAGAAAGGCTGGCCCAAAGGTGTCAAACGAGGCCCTCCTAAATGGAGACTGAAAGAGCGCAAAATGGGATTTAAGCTTAATCTCTACACACCTCCTGAGACACCAATGGTCACAGTGGAGCAGGAGCAAGATGACGAGCAGGATGCCAGTCCTGCGTCATTCTCAGGACCATGCCAGTCTTTCAGAGAGTCCAGGCCAGAGGACCCAGAGCTGGACACCTGCGTTTCAGTGCCCCCCAGTCCCGAGCCACCAAAGTCTCACAAAGTAAACGAGGATGAGTCAACAGACAAGTCTGACACTGTGGAAAATTCCCCCTCTGCCGATGATACCAATGAGACAACACCAGGTCCAATAGATGATCCCGAGCAGTCAACTCAAAATGCAGAGGAGCTTGAGGACCTTAAGCCAGAGGGGGAAACAGAAGGCAGACCTGTCAAAGGCTCTGGTGAAGGAGACGAGGAAGAGGATGAGGATGAAGAGCCTGAACCGTCTCATCTAGATGATCATGAtgcagatgatgaagatgatagtCATGAGCAGAGAATGGAGGATCCAGTGCCACTACCAGAAAGAGACCTTACTGAAGACACAGAGCCGAGTCctagtaataacaacaataaacaacCTGAAGAGCAGCCGAGCCCTGGAGAACCACCGTCTCACTGCTCAGAGGAGCTTGCATCAGAAAGTGCTCTTGTGAACTTGGGCATGCAGGATGGTGACACTGTGGACTCAGATCACACTCCAGACTCAGAAACAGAGGAGGAAGATAATCTTGAAAAGCCTGAAGAAAAGCAAATGGGCCCGTTGACCCCGGCAATAAAAGAGGACCATAACATTTGCCCTGAGCTTGACATGGAGACGGCTCAAGCCGTGCAGTCTCTTACTCAAGAGTCCGAGCAGGAGAGGCACTTTCAGGACTGTGCGGAGACTCAGGAAGCCTGCCACAGCCTACAGCGCTATGTTCACGTCGAGCAGAGCCCTCAGATGACTCCTGTGGATGATTGCCAACAGTCAGATCACAGCAGCCCCCTGTCTTCTGTCCACTCTCACCCGAGTCAATCTGTAAGATCAGTTAACAGTCCAGCCGTGTCTATTTTAGAAAGTGGTTACACACAAATCAGCCCCGATCAGGGCACCGTTTCAGTGCACTCACTTCATAACAACATGGAAACCAGTCCAATTATGGATGTGCCCTCAGTGTCGGACCACTCTCAGCAGGTGGTGGATAGTGGCTTCAGTGACCTGGGTAGCATTGAGAGCACCACTGAGAATTACGAGAATCCCAGCAGTTATGATTCCACACTGGGTAACAGCATTTGTGGCACAGGAGCAGGAGCGGGCGCCTCCTCCCAGAGCAGCTGTTCCTATGGCAACCTCTCCTCCGGTGGCAGCCACAGTCAGAGCAGCTGTGCTGTGTCCCAGCAGATGGCCGGTCCTGTGGTGAACAATACTGGCGCTTGCAGCATGCTCCAGCAAACCAGCATGAGCTCCCCTCAGGGATGCAGTGTGAAGTCTCCGCAAGGCTGTGTGCCCGAGAGGCAGCCTAGCCATTCACATGGACATGGGCATGGTCATGGTCATGGGCATGGGCATAGCCACAGTCACCACCACAGCCATCACCAGCACCATCCGCATCATCAACATCACCAACACCCGCAACACCAGTACCAGCAGCCCCTGTCGCACTGCTCCATGCCGGCCAGCTTTCCTCCTCCACCCATGCAGCTGCCCGATATCCCCGAATCCAACAATCCTTCCACTAACCTGGGTCTGTATGACCGAATGGGCCAGGGTGAGTATGGAACTGGACACTATGGTCATCTACATAAGCTACAGCAGCTCACCAACACCATCATGGACCACTCCTTGCCCTTCAGCCATTCTGCCTCACACTCCATCCCATCCTATGCAAACAACAACGGCTCATTGTCAACGCAGCTTGGTCCTCATAATCCCACGCTGGTGTCGCTGTCACAGCCCGGTGGAGGTCCTCAGTCGCAATCTACTGTGACCCCTCCGCCCAACATGACTCCACCACCCATGATGCTGCAGCGCAACATGGCTACACCAAACATGAACCTCGCCCCCTCGCAGAGACTTCAAACACAAATGCCCCCCAAGAATCACCATCACCACCCCGTGTCCATCCGCTCCAAATCAGCCCCTCTGCCGCCCCACCACCAGCAGCAGATGTATGGTAGGGGTCCTCAGTCCGTAGCCATGCAGGCTCCTGGCAGGACACTGGCAATGCCGACGCGGATGAACATGGGggtgaacctcatgcctgctccgGCTTACAACGTCAACTCCATGAACGTGAACGTCAATATGGCGATGAACACCTACAGAGTGACACAGCCCATGATGAACGGGGGCTACCATGGCAATCCTACCTATATGAATCAATCTCCACAGTACTCTATGCAGATGGGCATGATGGGTACCCAGCCTTACCCGCAGCAGCCCATGCAGGCCCCTCCTCATGGCAATATGATGTACAGCCCAGCAGGTCATCATAGTTATGTGAACACTGGCATGTCCAAACAACCCCTAAACGGGCCTTATATGAGACGATAA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016573 histone acetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-000607-52 Predicted to enable histone acetyltransferase activity; histone binding activity; and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone acetylation; nucleosome assembly; and regulation of transcription, DNA-templated. Predicted to be part of nucleosome. Is expressed in forebrain. Human ortholog(s) of this gene implicated in bipolar disorder; blepharophimosis-intellectual disability syndrome, SBBYS type; breast cancer; and leiomyoma. Orthologous to human KAT6B (lysine acetyltransferase 6B).

Ensembl:

ensembl_id ENSDART00000136624

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012780 lncRNA downstream 79785 24786959 ~ 24791265 (-) False XLOC_006624
TCONS_00013788 lncRNA downstream 247825 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012771 lncRNA downstream 264423 24602410 ~ 24606627 (-) False XLOC_006620
TCONS_00013789 lncRNA downstream 264423 24604380 ~ 24606627 (-) True XLOC_006620
TCONS_00012770 lncRNA downstream 282830 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013790 lncRNA upstream 329633 25210158 ~ 25214454 (-) False XLOC_006629
TCONS_00012796 lncRNA upstream 340650 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012801 lncRNA upstream 592681 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012804 lncRNA upstream 598121 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012809 lncRNA upstream 654688 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012782 mRNA downstream 765 24830737 ~ 24870285 (-) True XLOC_006625
TCONS_00012779 mRNA downstream 44443 24782564 ~ 24826607 (-) False XLOC_006624
TCONS_00012778 mRNA downstream 44443 24782564 ~ 24826607 (-) False XLOC_006624
TCONS_00012777 mRNA downstream 45359 24781188 ~ 24825691 (-) False XLOC_006624
TCONS_00012786 mRNA upstream 747 24881272 ~ 24906307 (-) False XLOC_006627
TCONS_00012787 mRNA upstream 4556 24885081 ~ 24906307 (-) True XLOC_006627
TCONS_00012788 mRNA upstream 37571 24918096 ~ 25198025 (-) False XLOC_006628
TCONS_00012789 mRNA upstream 38069 24918594 ~ 25199260 (-) False XLOC_006628
TCONS_00012790 mRNA upstream 39503 24920028 ~ 25196758 (-) False XLOC_006628
TCONS_00012759 other downstream 584660 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 743871 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012752 other downstream 909644 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012744 other downstream 1357247 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012725 other downstream 2012595 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012791 other upstream 178208 25058733 ~ 25199225 (-) False XLOC_006628
TCONS_00012793 other upstream 311051 25191576 ~ 25198063 (-) True XLOC_006628
TCONS_00012805 other upstream 650009 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012810 other upstream 665151 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012832 other upstream 1686541 26567066 ~ 26567184 (-) True XLOC_006646

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_12381049_12417489.mRNA True 7825 mRNA 0.47 20 CI01000012 12380192 ~ 12418697 (+)
bowfin (Amia calva) AMCG00003000 True 6904 mRNA 0.45 16 CM030139.1 9325459 ~ 9346898 (-)