RNA id: TCONS_00012788


Basic Information

Item Value
RNA id TCONS_00012788
length 2971
RNA type mRNA
GC content 0.41
exon number 11
gene id XLOC_006628
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24918096 ~ 25199260 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCAGCAGCCAGTCAAAATGCCCTTTTTGGGATGGGAAACCCCCTGCTTGACATCTGCGCTGTGGTGGACAAAGACTTTCTAGACAAGTATGGGCTCAAGCCAAATGACCAGATATTGGCAGAAGATAAACACAAGGAAATGTTTGAAGAGATGGTCAAGAAATTCAAGGTTGAATATCGTGCTGGAGGTGCCACTCAGAACTCTGTGAAAGTTGCACAGTGGATGATCCAGGAGCCGCACAATGTGGGCACCTTCTTCGGCTGCATCGGAAAGGATAAGTTCGGGAAGATCCTGAAAGAGAAGGCGGAGGAGGCCCACGTGGATGCCCACTACTATGAGCAGAGTGAGGAGCCCACGGGGAGCTGCGCTGCCTGCATCACTGGCGACAACAGGTCTCTTGTTGCAAATCTCGCTGCCGCTAATTGCTACAAGAAAGAGAAACACCTCGATCTGGAGGAGAACTGGAAACTTGTTGAGAAAGCCCAAGTTTACTACATCGCTGGCTTCTTTCTGACCGTGTCCTTGGAGTCGATCCTAAAGGTGGCCAAACACGCTTCTGAAAACAACAAGATCTTCTGCTTGAATCTGTCAGCTCCGTTCATCTGCGAGTTTTTCAAGGAGGCCCTGATGAAGGTGATGCCCTATGTCGACATCCTTTTCGGCAATGAAACGGAGGCCGCTGCGTTTGCACGGGAGCAAGGCTTCGAGACCGAAGACATCGAGGAGATTGCGAAGAAGGCCCAAAGCTTACCCAAAGAGAACAAGAAAAGGCAGAGGATTGTTGTCTTCACCCAAGGCAAAGAAGGAACTGTAATGGCCAAAGGTGACAAGGTGGAGACATTCCCTGTCCTGGAGATCGACCAGAGCGAGATAGTGGACACCAATGGGGCTGGAGACGCTTTTGTTGGAGGTTTCCTGTCTCAGCTGGTACAGGATAAGACCTTTGAGCAGTGCATCCGCGCTGGGCACTACGCTGCTAACGTCATCATTCGCCACGCGGGCTGCACATTCCCAGAAAAGCCAGACTTCCACTGACGGGCCGCTGAGAGACCGGAAGATTTGGCCGCACAAGTGTTTTATAGGACTaatgcctttcttttttttttctttttttaattgactttttatCTTCTTTTCCTCTTTcctctcttgttcactgcctGCTGCCTTCCGTGCCTCGTGGGTTTTTTCTGTCTCACGGCTTAATGCGATCACAGAGATGTTTTTCACATTTCAACTGTTTACAAAAGAGGCAAAAAGAGGAATTTTTGTGATGAAAgtgttgatttgtttttaatgagTCCATTTTAGTATTGCAGTTAAAGATCATGGTCAGAACGTATGAAAGCTACTTTCTGCCAttggaataaaatgtaaaaatttttgtTGTGACTTTTCTTCTTACAATTCTGAGATAAAATTGCAAGATTATATTTGATTCTGGTTGATTACTCAGAttcttgcaaaaacaaaaaaaaactttctatatAAACTTAATTGAAATAAAGAATATAAACTCCCAAAAATTGGCAATTcagaatgaaaatatttaaaattgtgagATACAAACTCTTGACTTCTTTCGGTCATGCTGTATATCTCTCAATTCAGTTTTTCTGAGAATTGTAAGTTTTTCTGAGACTTGCAAATCTCACAGTTCTGACATTTTCTCAGAATTGCAACTTGTCGTGACAAATTTAACAGTTCTTTCAACCAATTGTGAGTTTACACCTCTTCAAGTAAAAAGAAAGCAGAATTGCGGCAAGAAATCATTTGCATGAAAAAAGCCAGCCAATAAACTGGTTATTGCAAGAAATAGTCACAATTCTAACAGAAAAATCTAAAGTACAATACAAATTGGaagaaaataaagtttaataaataaactttaaattgcaaaaaagcTCGCAATTCTGAgaaagtaaatacataaaaaaacatacatacaaactCATACATACAaagaatttcaaaataaatatagttCCAATATGTTCAGTCTCACAATGTTGACTTTGTCACagaattcacttttttttttttgcaatgtactgtcaggtaaataaaaaagttaagtaTGAGACAAACAAAAAATTGCATTGAGTTGAGTCACAATTaccatatttttatattattttcatttgtttgatcCTATGGCAGAAACAGGCGTCTGTATTTTAAGATGTGACTGTTTGCTTACATAATTACCTTAATCATATGGTGAGACTGCTTTAAAAACTGATACGTAAATTACAAACATTGATTACAGTCGCCAGATGAATGATATGAACTTTAACGAAATCAAAGGCTTGTTTTATCTCAGAGGAATTTTGTTGGCCAGTCCTGCTGTTGTAAACCAAATGTAATTGTGAAAAGCACACTCGAATGTGTCACGATCAAAGAAATCTGTTGTTGTGTGAGCATAACCTCTgccaaaataagaataaaagagcCTGTATTACTGCTGTCACTTTCATTCTCTTCCTTGCATTATAATTGCTTATGAAAAATGAGTGTTTTATTGCTTGAATTGGGATTCTAATGTGTGTTTTTGGTCCAACAGAAAAGCGGGACTCCACTATTGGCCTGTTTTACTCACCTGTGTGTTCTCTTGGATGGTTAGAAAAAGCCTCCAGCTTCTTCCTGTCCCGTTGATGACAGTAGCAGGTCTGCATGGGTTCATCTCTGTGATTTGGCATGAAGAGTAGCTATTGTGAGCATCATTAGAGAGACTGAAGGTACAGCTGCCCCTTTGTCACAGTGGATCCGGGTTCTgtcaatgacacacacacattggcATCACCAAGCACATGGTTTTAAACAACCCGCTAGTCTGCGAAATCCTTAATGACAGCGAAGGACAAAGTCCTTGAGCACTATTTCACATTTTCAGCTCTCGCACATGGTCACACTGGTGTTTTTTCCACTTCTCTAATCCTCCCGCTGTGGGTTGTACAATGATGCTGGG

Function

GO:

id name namespace
GO:0006166 purine ribonucleoside salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004001 adenosine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030425-3 Predicted to enable adenosine kinase activity. Predicted to be involved in AMP salvage. Predicted to act upstream of or within phosphorylation and purine ribonucleoside salvage. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including digestive system; fin; immature eye; nervous system; and periderm. Human ortholog(s) of this gene implicated in hypermethioninemia due to adenosine kinase deficiency. Orthologous to human ADK (adenosine kinase).

Ensembl:

ensembl_id ENSDART00000159585

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012780 lncRNA downstream 126831 24786959 ~ 24791265 (-) False XLOC_006624
TCONS_00013788 lncRNA downstream 294871 24590420 ~ 24623225 (-) True XLOC_006619
TCONS_00012771 lncRNA downstream 311469 24602410 ~ 24606627 (-) False XLOC_006620
TCONS_00013789 lncRNA downstream 311469 24604380 ~ 24606627 (-) True XLOC_006620
TCONS_00012770 lncRNA downstream 329876 24585224 ~ 24588220 (-) True XLOC_006618
TCONS_00013790 lncRNA upstream 12133 25210158 ~ 25214454 (-) False XLOC_006629
TCONS_00012796 lncRNA upstream 23150 25221175 ~ 25222494 (-) True XLOC_006629
TCONS_00012801 lncRNA upstream 275181 25473206 ~ 25477370 (-) False XLOC_006632
TCONS_00012804 lncRNA upstream 280621 25478646 ~ 25484733 (-) True XLOC_006632
TCONS_00012809 lncRNA upstream 337188 25535213 ~ 25540686 (-) False XLOC_006634
TCONS_00012786 mRNA downstream 11789 24881272 ~ 24906307 (-) False XLOC_006627
TCONS_00012787 mRNA downstream 11789 24885081 ~ 24906307 (-) True XLOC_006627
TCONS_00012784 mRNA downstream 37571 24871050 ~ 24880525 (-) False XLOC_006626
TCONS_00012785 mRNA downstream 40519 24875927 ~ 24877577 (-) True XLOC_006626
TCONS_00012783 mRNA downstream 43146 24871050 ~ 24874950 (-) False XLOC_006626
TCONS_00012794 mRNA upstream 13914 25211939 ~ 25284379 (-) False XLOC_006629
TCONS_00012795 mRNA upstream 14369 25212394 ~ 25284716 (-) False XLOC_006629
TCONS_00012797 mRNA upstream 99232 25297257 ~ 25305179 (-) False XLOC_006630
TCONS_00012798 mRNA upstream 100343 25298368 ~ 25303303 (-) True XLOC_006630
TCONS_00012799 mRNA upstream 205388 25403413 ~ 25408387 (-) True XLOC_006631
TCONS_00012759 other downstream 631706 24283670 ~ 24286390 (-) True XLOC_006607
TCONS_00012755 other downstream 790917 24127063 ~ 24127179 (-) True XLOC_006605
TCONS_00012752 other downstream 956690 23961292 ~ 23961406 (-) True XLOC_006602
TCONS_00012744 other downstream 1404293 23488297 ~ 23513803 (-) False XLOC_006598
TCONS_00012725 other downstream 2059641 22856335 ~ 22858455 (-) True XLOC_006586
TCONS_00012805 other upstream 332509 25530534 ~ 25530648 (-) True XLOC_006633
TCONS_00012810 other upstream 347651 25545676 ~ 25548614 (-) False XLOC_006634
TCONS_00012832 other upstream 1369041 26567066 ~ 26567184 (-) True XLOC_006646
TCONS_00012849 other upstream 2453154 27651179 ~ 27663072 (-) False XLOC_006653
TCONS_00012853 other upstream 2492135 27690160 ~ 27690276 (-) True XLOC_006654

Expression Profile

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