Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU14066 |
| length | 396 |
| RNA type | TUCP |
| GC content | 0.51 |
| exon number | 1 |
| gene id | G12670 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 478386 ~ 478781 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU14060 | lncRNA | upstream | 9953 | 468102 ~ 468433 (+) | True | G12664 |
| TU14046 | lncRNA | upstream | 38634 | 437528 ~ 437637 (+) | True | G12650 |
| TU14052 | lncRNA | upstream | 59151 | 418962 ~ 419235 (+) | True | G12656 |
| TU14042 | lncRNA | upstream | 61545 | 414496 ~ 416841 (+) | True | G12648 |
| TU14023 | lncRNA | upstream | 104901 | 372764 ~ 373485 (+) | True | G12629 |
| TU14071 | lncRNA | downstream | 20077 | 504487 ~ 504749 (+) | True | G12674 |
| TU14086 | lncRNA | downstream | 40064 | 524474 ~ 538363 (+) | True | G12685 |
| TU14089 | lncRNA | downstream | 55286 | 539696 ~ 545356 (+) | True | G12686 |
| TU14102 | lncRNA | downstream | 68043 | 552453 ~ 552967 (+) | True | G12698 |
| TU14103 | lncRNA | downstream | 68607 | 553017 ~ 553949 (+) | True | G12699 |
| CI01000001_00440891_00444667.mRNA | mRNA | upstream | 33403 | 440891 ~ 444983 (+) | True | CI01000001_00440891_00444667 |
| CI01000001_00436821_00439097.mRNA | mRNA | upstream | 38656 | 436821 ~ 439730 (+) | False | CI01000001_00436821_00439097 |
| CI01000001_00433013_00435064.mRNA | mRNA | upstream | 42847 | 433013 ~ 435539 (+) | True | CI01000001_00433013_00435064 |
| CI01000001_00426295_00431004.mRNA | mRNA | upstream | 47154 | 426065 ~ 431232 (+) | True | CI01000001_00426295_00431004 |
| CI01000001_00400604_00401694.mRNA | mRNA | upstream | 76462 | 400425 ~ 401924 (+) | True | CI01000001_00400604_00401694 |
| CI01000001_01088316_01091350.mRNA | mRNA | downstream | 603906 | 1088316 ~ 1091578 (+) | True | CI01000001_01088316_01091350 |
| CI01000001_01168378_01169553.mRNA | mRNA | downstream | 683107 | 1167517 ~ 1169642 (+) | True | CI01000001_01168378_01169553 |
| CI01000001_01209204_01212045.mRNA | mRNA | downstream | 724794 | 1209204 ~ 1212252 (+) | True | CI01000001_01209204_01212045 |
| CI01000001_01248946_01251200.mRNA | mRNA | downstream | 764536 | 1248946 ~ 1252096 (+) | True | CI01000001_01248946_01251200 |
| CI01000001_01357469_01365104.mRNA | mRNA | downstream | 872857 | 1357267 ~ 1365576 (+) | True | CI01000001_01357469_01365104 |
| TU13987 | other | upstream | 167445 | 309144 ~ 310941 (+) | True | G12614 |
| TU14049 | other | downstream | 3084 | 490574 ~ 492057 (+) | True | G12653 |
| TU14532 | other | downstream | 559303 | 1043713 ~ 1045152 (+) | True | G13051 |
| TU15116 | other | downstream | 1183610 | 1668020 ~ 1671004 (+) | True | CI01000001_01668334_01670035 |
| TU16602 | other | downstream | 3131838 | 3616248 ~ 3616411 (+) | True | G14846 |
| TU17650 | other | downstream | 4576808 | 5061218 ~ 5064704 (+) | False | G15794 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00044507 | False | 1980 | mRNA | 0.56 | 6 | NC_007134.7 | 39632962 ~ 39666519 (-) |
