RNA id: TU17889


Basic Information

Item Value
RNA id TU17889
length 235
lncRNA type intronic
GC content 0.35
exon number 1
gene id G15993
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5629854 ~ 5630088 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAGCATAAACAAGCGGTAATAGCATTGCTTATGCACATTGTAGTCTTTGACAAAAACATGATTTTCTCAGTTTTTTTTTTTAATGAAACTTACCCACATATAAGTGTTGATGAAAAAGAAAGCATGAAGCTAGAATAAAACATTATTGTTGTTTTTTCTTAAAAGCAGAGGCTCTGTTCTTTCTTTGGATATATTGCATGTTCAGATATTCATACAACAAAATATTATGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17887 lncRNA upstream 3003 5626607 ~ 5626851 (+) True G15991
TU17882 lncRNA upstream 16072 5612334 ~ 5613782 (+) True G15987
TU17885 lncRNA upstream 17576 5606519 ~ 5612278 (+) True G15989
TU17880 lncRNA upstream 28414 5601156 ~ 5601440 (+) True G15985
TU17879 lncRNA upstream 29351 5600223 ~ 5600503 (+) True G15984
TU17894 lncRNA downstream 15858 5645946 ~ 5646215 (+) True G15998
TU17895 lncRNA downstream 17146 5647234 ~ 5647464 (+) True G15999
TU17897 lncRNA downstream 23708 5653796 ~ 5654020 (+) True G16001
TU17898 lncRNA downstream 38266 5668354 ~ 5668695 (+) True G16002
TU17899 lncRNA downstream 40846 5670934 ~ 5671226 (+) True G16003
CI01000001_05587090_05591952.mRNA mRNA upstream 37716 5587090 ~ 5592138 (+) True CI01000001_05587090_05591952
CI01000001_05581818_05584137.mRNA mRNA upstream 45233 5581818 ~ 5584621 (+) True CI01000001_05581818_05584137
CI01000001_05579315_05580553.mRNA mRNA upstream 49151 5579315 ~ 5580703 (+) True CI01000001_05579315_05580553
CI01000001_05565644_05568075.mRNA mRNA upstream 61366 5565644 ~ 5568488 (+) True CI01000001_05565644_05568075
CI01000001_05498507_05500723.mRNA mRNA upstream 128738 5498210 ~ 5501116 (+) False CI01000001_05498507_05500723
CI01000001_05689002_05702184.mRNA mRNA downstream 58567 5688655 ~ 5702684 (+) False CI01000001_05689002_05702184
CI01000001_05734513_05735964.mRNA mRNA downstream 103033 5733121 ~ 5736013 (+) True CI01000001_05734513_05735964
CI01000001_05795264_05798555.mRNA mRNA downstream 165176 5795264 ~ 5799834 (+) True CI01000001_05795264_05798555
CI01000001_05803416_05809184.mRNA mRNA downstream 173328 5803416 ~ 5809306 (+) True CI01000001_05803416_05809184
CI01000001_05814686_05836203.mRNA mRNA downstream 184558 5814646 ~ 5837238 (+) False CI01000001_05814686_05836203
TU17699 other upstream 339898 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 565150 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 565925 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 2008403 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3958850 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU17891 other downstream 81797 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 1902484 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 1902552 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 1902676 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 2402036 8032124 ~ 8032483 (+) True G17234

Expression Profile