RNA id: TU21702


Basic Information

Item Value
RNA id TU21702
length 305
RNA type TUCP
GC content 0.41
exon number 2
gene id G19314
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11501194 ~ 11558673 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTACTGCTCTATACTGAAAGAGAAGATGCTACCATCACTTGGTCGTCGTGCACTTTTCCAACATGACAATGATCCTAAACACATTTCTGAAGAAGAACAGGGTGAAAGTGATTCAGTGGCTCCTGATCTGAACCCAATCGAACACCTATGGGGAATTCTGAAGAGACAAGTTGAGCATCACTCTCCATCCAGCATCCAGTCTCTAAAAGAGCTCATTCTTGAAGAATGGAAAAAGATAGATGTTGCAAAATGTCGCCAACTTGTTCATTCCATGCCTAGAAGACTTGGTGCTGTCATTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21700 lncRNA upstream 680 11500217 ~ 11500514 (+) True G19312
TU21642 lncRNA upstream 7338 11428104 ~ 11493856 (+) False G19266
TU21647 lncRNA upstream 7338 11428104 ~ 11493856 (+) True G19266
TU21631 lncRNA upstream 111336 11389555 ~ 11389858 (+) True G19259
TU21630 lncRNA upstream 113235 11387643 ~ 11387959 (+) True G19258
TU21742 lncRNA downstream 110291 11668964 ~ 11670995 (+) True G19349
TU21799 lncRNA downstream 122034 11680707 ~ 11680946 (+) True G19394
TU21750 lncRNA downstream 123884 11682557 ~ 11687675 (+) True G19351
TU21765 lncRNA downstream 131252 11689925 ~ 11690609 (+) True G19362
TU21820 lncRNA downstream 197924 11756597 ~ 11758207 (+) True G19411
CI01000001_11440491_11445508.mRNA mRNA upstream 55654 11439979 ~ 11445540 (+) True CI01000001_11440491_11445508
CI01000001_11431153_11431434.mRNA mRNA upstream 69607 11429876 ~ 11431587 (+) True CI01000001_11431153_11431434
CI01000001_11359106_11376288.mRNA mRNA upstream 124309 11359106 ~ 11376885 (+) True CI01000001_11359106_11376288
CI01000001_11265638_11283027.mRNA mRNA upstream 217958 11265638 ~ 11283236 (+) True CI01000001_11265638_11283027
CI01000001_11246797_11247315.mRNA mRNA upstream 253653 11246649 ~ 11247541 (+) True CI01000001_11246797_11247315
CI01000001_11656975_11660666.mRNA mRNA downstream 97356 11656029 ~ 11661866 (+) True CI01000001_11656975_11660666
CI01000001_11756218_11760009.mRNA mRNA downstream 197488 11756161 ~ 11761497 (+) True CI01000001_11756218_11760009
CI01000001_11809724_11812692.mRNA mRNA downstream 250754 11809427 ~ 11813444 (+) True CI01000001_11809724_11812692
CI01000001_11898621_11898914.mRNA mRNA downstream 339624 11898297 ~ 11900188 (+) True CI01000001_11898621_11898914
CI01000001_11990189_11991073.mRNA mRNA downstream 429404 11988077 ~ 11991195 (+) True CI01000001_11990189_11991073
TU21382 other upstream 647211 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 961348 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 961444 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667
TU21268 other upstream 1024805 10474984 ~ 10476389 (+) True G18937
TU21193 other upstream 1104489 10393557 ~ 10395953 (+) True G18875
TU21803 other downstream 122649 11681322 ~ 11681817 (+) True G19395
TU22314 other downstream 1954731 13513404 ~ 13513609 (+) True G19868

Expression Profile