RNA id: TU22314


Basic Information

Item Value
RNA id TU22314
length 206
RNA type TUCP
GC content 0.45
exon number 1
gene id G19868
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 13513404 ~ 13513609 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAACCTTCCGGTGGCCCTGTTGGAAATTCTGATAGGGTTGCCATTTTCACTTAATATATATATAAAAAAACAAATACAGTCTTTAGGAAACGCAGAAATGAGAAATGAGTTTATTTGCGAATGCTAAACACCAGAGGAAAAACCACTAGAGTAAACAATGGCAGACTCTGTAATGATGGGGAGCGCGTCTTTAAACTCCGGAAGCCGCTCTGGAAGCAGTAAGACCAGCACAAGTCCTACAGAAAACTATCAGCTGGCTCGGAGACGCACACTGCAGGTGGTGGTCAGCTCTCTGCTGACAGAGTGTGGCTTTGAGAGCGCTGAGAAAGCTGCGGTGGAGACACTCACTGAGATGATGCAGAGCTGTGAGTCCTTCATTTATCTTATGCCAGGTCACCTGTGAGGCTTGTAAAATGTTTAAAAACTGTCAGATCATCCATGGATGTAAAGCTAGGTTCACATTGTATGATTTTGGCCACTGTTTGTCAGTCTGAGACAAATTTTGTGAATCCTAAAAGATTCCTCTGATATATATATATATATATATATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22306 lncRNA upstream 25938 13482574 ~ 13487466 (+) True G19860
TU22329 lncRNA upstream 42845 13466543 ~ 13470559 (+) True G19883
TU22467 lncRNA upstream 114267 13398792 ~ 13399137 (+) True G20007
TU22456 lncRNA upstream 129888 13383118 ~ 13383516 (+) True G19996
TU22453 lncRNA upstream 131536 13381631 ~ 13381868 (+) True G19993
TU22484 lncRNA downstream 3774 13518235 ~ 13518461 (+) True G20024
TU22289 lncRNA downstream 4279 13518740 ~ 13519098 (+) True G19843
TU22485 lncRNA downstream 7309 13521770 ~ 13522117 (+) True G20025
CI01000001_13470823_13478394.mRNA mRNA upstream 35006 13470670 ~ 13478398 (+) True CI01000001_13470823_13478394
CI01000001_13342394_13343095.mRNA mRNA upstream 169620 13342093 ~ 13343784 (+) True CI01000001_13342394_13343095
CI01000001_13329841_13334948.mRNA mRNA upstream 178102 13329841 ~ 13335302 (+) True CI01000001_13329841_13334948
CI01000001_13309045_13319725.mRNA mRNA upstream 193525 13309045 ~ 13319879 (+) True CI01000001_13309045_13319725
CI01000001_13301404_13306593.mRNA mRNA upstream 206811 13301404 ~ 13306593 (+) True CI01000001_13301404_13306593
CI01000001_13524372_13525844.mRNA mRNA downstream 9000 13523461 ~ 13525863 (+) True CI01000001_13524372_13525844
TU21803 other upstream 1831587 11681322 ~ 11681817 (+) True G19395
TU21702 other upstream 1954731 11501194 ~ 11558673 (+) True G19314
TU21382 other upstream 2659421 10850924 ~ 10853983 (+) True G19039
TU21319 other upstream 2973558 10538472 ~ 10539846 (+) True CI01000001_10538498_10539667
TU21318 other upstream 2973654 10538472 ~ 10539750 (+) False CI01000001_10538498_10539667

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043251 False 1510 mRNA 0.44 8 NC_007134.7 32392461 ~ 32400994 (+)