RNA id: TU39083


Basic Information

Item Value
RNA id TU39083
length 697
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G34461
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14687437 ~ 14693318 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTGGCCAAGTGGTGTAATATACAATGTTTCTATTTTTTGTTGAAAATGTTGTGGCCCCTTTAAGAAAACTCCTCTCTCTTCTCGCGATACTTTTTGCGCGATTTGGATGCATGTGCGCGACCAGAGAAGCCATTCTCACTGTCCACGAGAGCTCCATGTGCTAGTGCTTGCATTCGGTCTAATCTAACGTAGTTTCGTCATCTTTCGGTCGATGCTTTTGGATCGAGTGAGTGACGAGTGAACCTTGTGGCAAATAGTAAAGGATTATTGGCCACTGCCGTATTCCAGTCTGTATTAACATTTGTTTTGTTTTTTTCAAGTAATTTGGTTATTTCCGGTGGACTCCGGTGCGTTTTTTTGTTAGTCTTTTACCTTGCATCTTACTGTACTTCAGTGGTGGCATATAGTCATCTGAATTACATCTAGTCGATTGGAAGTGACACTAATTATTGTCGTAACTTATCTTTGCAACAATTGATTGTCATTTCTCTGATTTTGATTGCTTAAACTATGGATAAGAGTTTTTTTTCTTTTTGTATGGTGTAATTAGTGAAATCTTCAACTATCCAAAATTTACTTCTGTAAGTGTGCTTATTCAAGTTTTGCTCCCATCGACCGCTGTCATTTTTTTTTTGAACAGCAGTCAGATTAAACAAACCCCACATTTTGAAAAGCATAATTTTGCTTCCGGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38283 lncRNA downstream 68451 14618653 ~ 14618986 (-) True CI01000004_14618502_14618962
TU38275 lncRNA downstream 73992 14613415 ~ 14613445 (-) True G33768
TU38265 lncRNA downstream 98409 14588598 ~ 14589028 (-) True G33758
TU38240 lncRNA downstream 129531 14557495 ~ 14557906 (-) True CI01000004_14557340_14560918
TU38131 lncRNA downstream 159810 14527408 ~ 14527627 (-) True G33650
TU39122 lncRNA upstream 13405 14706723 ~ 14707120 (-) True G34479
TU39155 lncRNA upstream 61607 14756376 ~ 14756654 (-) True CI01000004_14756092_14758171
TU39158 lncRNA upstream 64379 14757697 ~ 14758230 (-) True CI01000004_14756092_14758171
TU39125 lncRNA upstream 72366 14766045 ~ 14766157 (-) True G34481
TU39163 lncRNA upstream 74766 14768084 ~ 14768531 (-) True CI01000004_14758580_14768474
CI01000004_14680228_14681912.mRNA mRNA downstream 5437 14680198 ~ 14682000 (-) True CI01000004_14680228_14681912
CI01000004_14676793_14679785.mRNA mRNA downstream 7581 14676422 ~ 14679856 (-) False CI01000004_14676793_14679785
CI01000004_14664077_14671104.mRNA mRNA downstream 15417 14663751 ~ 14672020 (-) True CI01000004_14664077_14671104
CI01000004_14662741_14663250.mRNA mRNA downstream 23944 14662596 ~ 14663493 (-) True CI01000004_14662741_14663250
CI01000004_14655837_14658862.mRNA mRNA downstream 28428 14655769 ~ 14659009 (-) True CI01000004_14655837_14658862
CI01000004_14703243_14703841.mRNA mRNA upstream 9689 14703007 ~ 14704080 (-) True CI01000004_14703243_14703841
CI01000004_14709151_14709649.mRNA mRNA upstream 15741 14709059 ~ 14709719 (-) True CI01000004_14709151_14709649
CI01000004_14713133_14720728.mRNA mRNA upstream 19669 14712987 ~ 14720794 (-) False CI01000004_14713133_14720728
CI01000004_14722691_14723147.mRNA mRNA upstream 29263 14722581 ~ 14723237 (-) False CI01000004_14722691_14723147
CI01000004_14725359_14726043.mRNA mRNA upstream 31954 14725272 ~ 14726845 (-) True CI01000004_14725359_14726043
TU39093 other downstream 7730 14679139 ~ 14679707 (-) True CI01000004_14676793_14679785
TU39081 other downstream 14422 14672539 ~ 14673015 (-) True G34459
TU38297 other downstream 48963 14637851 ~ 14638474 (-) True G33783
TU38268 other downstream 92311 14595070 ~ 14595126 (-) True G33761
TU38263 other downstream 101692 14585171 ~ 14585745 (-) True G33756
TU39139 other upstream 26880 14723108 ~ 14723219 (-) True CI01000004_14722691_14723147
TU39140 other upstream 26880 14720198 ~ 14720800 (-) True CI01000004_14713133_14720728
TU39147 other upstream 50534 14743852 ~ 14744336 (-) True CI01000004_14742838_14744316
TU39154 other upstream 57853 14751171 ~ 14751719 (-) True CI01000004_14749034_14751685
TU39156 other upstream 62620 14755938 ~ 14756654 (-) False CI01000004_14756092_14758171

Expression Profile