CI01000004_14756092_14758171


Basic Information

Item Value
gene id CI01000004_14756092_14758171
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14755814 ~ 14758237 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39155
GAAGAAGATCACAACATCTCTGCATATATCCTTGGTGATTTCAGTTGTATATAATGACACTCTGGAAAAGTGTCATTGTGATCATATTTTTATATATCTGGGGATGTAAATCTGAAGATAAAGTTGATCAGCACACAAAGATTCAGTCTGCTTTTGAAGTGCAAACATGACGATCCTTTGTGTTCTGCTTCTGCTATTGTTGATGAAAAGGGAGACATTTGCACAGTCAATAACACCGCTGGAAAACAAGGTGCTTAAATCTGCAGGAGACGAAGTCACTCTGTCCTGTGAATATGATGGATCTATAGATAACCTGCACTGGTATCGTCAGTATCCGGGATCCAAACCAGAGTTCCTCGCATTCATTTATCCACAAGGAACCACAAGTAACCCTCTTCCTCCT
>CI01000004_14756092_14758171.mRNA
ATCTGCAGTGACTTACAGCTCAAGCACTGAGAGCCTCAACAGAGAACTGATCTGATCTGATTCAACATGGACACATGCTTCATACTTATTCTCATTGTGGGAACAGGTTTGGTGACTGGAGACAACATTGAGCCAGATAAAGAGAGAGAAAAGAACAGTAAAGAAACAGAAACTGTCAAGTTGAGCTGCTCATATAGTACAAATAGTGAATATGTTTATCTTTACTGGTACAGACAATATCCAAACAAAGAACCTCAGTATTTATTATTCAAAGGAGCCCGATCACTTAGTTCTGATGGACACACTTCCGATGATCGGTTTCAGTCGACTACATCACGAACATCCACTGAACTCACTATTACTGATTTGTATATAATGACACTCTGGAAAAGTGTCATTGTGATCATATTTTTATATATCTGGGGATGTAAATCTGAAGATAAAGTTGATCAGCACACAAAGATTCAGTCTGCTTTTGAAGGTGATGATGTAACAATCAACTGTACATATCAGACTTCTTACACAAACCCGACTCTCTTCTGGTACCAGCAGAAAGTTAATGGGATCCCCAAGTACATGTTGAATAGATTCTCTAACACTGGAAAAAATGAGGATGAATTCGAGGAGAGATTTCAAGCAAATCTCAGCAAAACTTCAGTTCCTCTGACAATCAAGAACCTGTGTGTGTCTGACTCTGCTGTGTACTACTGTGCTCTGAAGCCCACTGTGACTCAAACACACTCAACACTCACACAAAAACTCTGACAGCAACAGCATCAATTACACCATTATACAATTTCAGTTTGTATTAGAATAATTCACCTACTTTATGATTTCATTTTTAAAAACCTTTTTATCCACATTTATGGATAAAAATATATATGGATATATTCATTTAAAAGTTTACACTCAATTCACATGATCTAATTTACATCAGTTATATTTACATTTGTATCAGTTTTCCCTTACAGTTGGTTTCAATTGATTTCATATTGCCCGTTACAATAATATATATCACCATAAATCTGGTTATTGCCATTAAA
>TU39156
GAAGAAGATCACAACATCTCTGCATATATCCTTGGTGATTTCAGTTGTATATAATGACACTCTGGAAAAGTGTCATTGTGATCATATTTTTATATATCTGGGGATGTAAATCTGAAGATAAAGTTGATCAGCACACAAAGATTCAGTCTGCTTTTGAAGGTGATGATGTAACAATCAACTGTACATATCAGACTTCTTACACAAACCCGACTCTCTTCTGGTACCAGCAGAAAGTTAATGGGATCCCCAAGTACATGTTGAATAGATTCTCTAACACTGGAAAAAATGAGGATGAATTCGAGGAGAGATTTCAAGCAAATCTCAGCAAAACTTCAGTTCCTCTGACAATCAAGAACCTGTGTGTGTCTGACTCTGCTGTGTACTACTGTGCTCTGAAGCCCACTGTGACTCAAACACACTCAACACTCACACAAAAACTCTGACAGCAACAGCATCAATTACACCATTATACAATTTCAGTTTGTATTAGAATAATTCACCTACTTTATGATTTCATTTTTAAAAACCTTTTTATCCACATTTATGGATAAAAATATATATGGATATATTCATTTAAAAGTTTACACTCAATTCACA
>TU39158
GTGACTTACAGCTCAAGCACTGAGAGCCTCAACAGAGAACTGATCTGATCTGATTCAACATGGACACATGCTTCATACTTATTCTCATTGTGGGAACAGGTTTGGTGACTGGAGACAACATTGAGCCAGATAAAGAGAGAGAAAAGAACAGTAAAGAAACAGAAACTGTCAAGTTGAGCTGCTCATATAGTACAAATAGTGAATATGTTTATCTTTACTGGTACAGACAATATCCAAACAAAGAACCTCAGTATTTATTATTCAAAGGAGCCCGATCACTTAGTTCTGATGGACACACTTCCGATGATCGGTTTCAGTCGACTACATCACGAACATCCAC

Function

NR:

description
T cell receptor V alpha chain, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39155 True 159 lncRNA 0.34 2 14756376 14756654
CI01000004_14756092_14758171.mRNA False 1043 mRNA 0.36 4 14755814 14758237
TU39156 False 597 TUCP 0.34 2 14755938 14756654
TU39158 True 340 lncRNA 0.35 2 14757697 14758230

Neighbor

gene id symbol gene type direction distance location
CI01000004_14754775_14755334 NA coding downstream 65 14754747 ~ 14755749 (-)
CI01000004_14749034_14751685 NA coding downstream 2218 14748304 ~ 14753596 (-)
CI01000004_14742838_14744316 NA coding downstream 11307 14742807 ~ 14744507 (-)
CI01000004_14727229_14729780 NA coding downstream 25919 14726932 ~ 14729895 (-)
CI01000004_14725359_14726043 NA coding downstream 28969 14725272 ~ 14726845 (-)
CI01000004_14758580_14768474 NA coding upstream 291 14758528 ~ 14768680 (-)
CI01000004_14770317_14773615 NA coding upstream 12049 14770286 ~ 14774000 (-)
CI01000004_14775109_14792782 NA coding upstream 16047 14774282 ~ 14792784 (-)
CI01000004_14794085_14794548 NA coding upstream 35795 14794032 ~ 14794593 (-)
CI01000004_14802126_14805324 NA coding upstream 43064 14801301 ~ 14805738 (-)
G34479 NA non-coding downstream 48694 14706723 ~ 14707120 (-)
G34461 NA non-coding downstream 62496 14687437 ~ 14693318 (-)
CI01000004_14618502_14618962 NA non-coding downstream 136828 14618156 ~ 14619037 (-)
CI01000004_14612987_14614652 NA non-coding downstream 142369 14612987 ~ 14614652 (-)
G33758 NA non-coding downstream 166786 14588598 ~ 14589028 (-)
G34478 NA non-coding upstream 47764 14806001 ~ 14806506 (-)
CI01000004_14815294_14818132 NA non-coding upstream 59489 14815142 ~ 14821516 (-)
CI01000004_14676793_14679785 NA other downstream 76107 14676422 ~ 14679856 (-)
G34459 NA other downstream 82799 14672539 ~ 14673015 (-)
CI01000004_14808034_14808645 NA other upstream 49815 14807938 ~ 14808969 (-)
CI01000004_14827536_14831360 NA other upstream 69393 14827496 ~ 14831526 (-)
G34632 NA other upstream 253124 15011361 ~ 15025221 (-)
G34668 NA other upstream 292939 15051176 ~ 15052775 (-)

Expression


Co-expression Network