CI01000004_14775109_14792782


Basic Information

Item Value
gene id CI01000004_14775109_14792782
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14774282 ~ 14792784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14775109_14792782.mRNA
ACATGGGAAAAATAAAAACTCCACGAGGAGAGAAAGCAAAAGTAGAGAACATTAACAACCAAATAACTCAGAACACCTTACTTGAGGTCGCTTGGAAGGACTTGAAGAAACAAAGTAGGAAGCATGCAGCCAAGACTCAAAAACCAAGTTTGGTGACTGGAGACAACATTGAGCCAGATAAAGAGACAGAAAAATACACTAAAGAAACAGAAACTGTCAAGCTGAGCTGCTCATATAGTACAAGTAGTCAATATGTTCTGCTTTACTGGTACAGACAATATCCAAACAAAGAACCACAATATTTATTACGCAAAGGAGCCCGATCACAGGGTGGTGAACACACCTCTGATAGTCGGTTTCAGTCGACTACATCACGAACATCCACTGAACTCACTATTACTGATCTGCTGTCTTTGGAAATACCATCAAACCAGACACAACAGATGCTGGTGCTGATGAGGGACAAAATGTTAAGTTGTCCTGTAGTTATTCCTCCACTGGAGGTTCAGATTATCTCTTCTGGTACCGTCAGTATGGAAGATCAAAACCTGAATTTCTTGTCCTCACCTTCAGTACTGAAAAAAAGCCTAAAGTATCAAAGTAACAAAGTAACAAAAAAGGAACAAATCCACGTGGATCTGGAGATCTCCTCTGCTGCAGTATCAGACTCTGCTCTGTATTACTGTGCTCTGCAGCCCACAGTCACAGGAAACACAAGAACACTGTACAAAAAACCCATTACACCATTTACAACCATGATTCCACTGTACCAGATGAACTGCTGCATCCAGAACCCTGTTGTTCATGGCACAGGATTGTGTCAGCACACAGATGTAAATCCTACAGATCTTTTAACTATAAACCTGATGATGGTGATGATCTCAACAGAAGAAGCTCCTCCTATAAAGTTTTGTAGGTCGACTACATCACAGAGACGCAAAAACAAGAGGTTCTCATTCTCTTCACATATTTGTGGGGTAAGTGACATCATGAATTTGGAAAGCACAACAGACATAATGACATACTGGAAAAGGGTGGTTCTCATTCTCTTCACATATTTGTGGGGCTGTGATTCTCTGGAGAGTGTTGAACAGAAAACAAGAGTTCAGATTGCTTTTGAAGGTGAATCAGTAACAATCAACTGTACATATTCAACCACTGATTCATTTTTTGAAGGTGAATCAGTAACAATCAACTGTACATATTCAACCACTGATTCATTTCCCGGATCTGGTGAGATTGATGAACAGTTTAAACTACTGTCTGTTAAACTCACTAAATGGGAACAAACTCATGTGGATCTGGAGATCTCCTCTGCTGCAGTATCAGACTCTGCTCTGTATTACTGTGCTCTGATGGAGATCTCCTCTGCTGCATGTCTCATAGTGCAGAACATCGAAAGACTCAACAAAGAACTGCTGATCTTATTCAACATGGACAGATGCTTTCTGATGATTGTAATTATGGGAACAGGTTTGGTGTCTGGGGACAATATTTGGCCAGATAAAGAGAAAAATGTTATCACAGAAGAAAGAGGAACTGTCAAGCTGAGCTGCTCATATAGTACAACCAGCAATGATGTTCGGCTTTACTGGTACAGACAATATCCACATGCAGAACCCTTGTTTTTAACATATAGAGGAGCACGATCACTGAGTGCTGCAGACAGCTCTGATCGTCGGTTTCAGTCGACTACATCACAAACATCCACTGAACTCACTATTACTGATAGTGCAGTACACAAGATTCTGTTAATCAGCCAACAAGAGTTCAAACAGCGTCTGAACATGACGTGGTCACACTTCACTGCACTTACAGTACCAGTGATCCATACCCTTATCTTTACTGGTACCAACAGAAAACCAATGGATTCCCAGTTTACATGCTCTCAACTGGATCAAGCAGCAGTGAAAAAGAATTTGAGGAAAGATTTCATGCAGATCTCAACAAATCCTCAAGCTCAGTTTCTCTGTCAATCCAGGATATCATATTTCCACAAAGATCTGGCTCATGTATTCCAGAATAAAAGACTCCAGCAGTGGGTGGAGCTGATTCACACTGATGCTGACAAAACTTCTTTGGCTGATACAATACATCCATTCACTTCAGAAAAACATGTTTTTCAGGGTGAAAATGTGATTCTCTTCTGTAACTACAGTACAACTGGGGGTGTCAGTGTTAACTCTCTCCAGTGGTATCGGCAGTATCCTGGAGCAAAACCAGAGTTCCTACTTCTTGTCACTGAATATTCAAACAAATCTGAGCCTGATCTTCGTCTGTTTTCAAAAGCTACAAAAGAGATCAAACGCGTGTATCTGGAGATCTCCTCTGCTGCAGTATCAGACTCTGCTCTGTATTACTGTGCTCTGGAGCCCACAGTCACAGGAAACACAAGAACACTGTACAAAAACCTGCTTGTGCTAAAAATGACACTATGGCGCTCCACAGTTCGGGAGAAATGGAACCCTTAAATCTTGAATTATACACAGACCCCTCTATCTACAGTAGAAGCATCTTGCCCATTCAAAGGAGCCATATGAAACACAAATGCATGATTAGTGTAGTGTTAGTTTACTCATTCGCATGTACAAATGTGATCAATACACAATCAAGGCACATCTTCAGATAAACTTTACTTTAACACTACAGGAAAAACAACAACAACAAAACAGGTGCATGAAGCCCATGGGTATATGCAGTGAGTAAATGGCTTCACGACATACACACAGAATTATGGGTAGAGGGGATCAAGCATGTGTTCAAAAACATTTTAGGCTAATCCTAATTTTACGAGAAATTATTCAAAATAACACATTTTAAGTCATTTCAAACTTTTTTCCACAAGGGGTCAGCATTGCTCTCTTCATGTATGAGTAGATCATTAAGCTCTGAGACAGACAGAGAGTCTTTAAGAGCAACGTTGAGCGAATTTCAGTTATTTTACCTCACAGAACAACTATGTTTAGCTGGGCTTTGATTTCCCTGTGTCTCATAGCAGCACATTATGATGGTAAGCACATTTTTTTCTGTTTTTCGGAACATTTTAACAGAACAAGGTTTACTTTCATTTAGATTATTAAATGTTTAAGTTTACTCTGCAAATAATTCATGTTAATGACATACTTTTTTCAGTGTCTTTGGGACAGGACAAAGTTGAACAGTCTTCAAGAGAAATGACTGCAAGTGAAGGAGATCAAGTTATTTTAAGGTGTAATTATACTACAAGTGATACAAGTCCATATCTCTTCTGGTACAAACAGCTACCAAACAAATCACCAACATTCATTCTAAATAAA
>TU39166
TTTTACCTCACAGAACAACTATGTTTAGCTGGGCTTTGATTTCCCTGTGTCTCATAGCAGCACATTATGATGTGTCTTTGGGACAGGACAAAGTTGAACAGTCTTCAAGAGAAATGACTGCAAGTGAAGGAGATCAAGTTATTTTAAGGTGTAATTATACTACAAGTGATACAAGTCCATATCTCTTCTGGTACAAACAGCTACCAAACAAATCACCAACATTCATTCTAAATAAATA
>TU39120
AGACTCAACAAAGAACTGCTGATCTTATTCAACATGGACAGATGCTTTCTGATGATTGTAATTATGGGAACAGGTTTGGTGTCTGGGGACAATATTTGGCCAGATAAAGAGAAAAATGTTATCACAGAAGAAAGAGGAACTGTCAAGCTGAGCTGCTCATATAGTACAACCAGCAATGATGTTCGGCTTTACTGGTACAGACAATATCCACATGCAGAACCCTTGTTTTTAACATATAGAGGAGCACGATCACTGAGTGCTGCAGACAGCTCTGATCGTCGGTTTCAGTCGACTACATCACAAACATCCACTGAACTCACTATTACTGATGTACGTCTGTCAGATTCAGCTCTCTATTATTGTGCTCTAAGAGTT

Function

NR:

description
T-cell receptor alpha variable region, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14775109_14792782.mRNA False 3296 mRNA 0.40 12 14774284 14792784
TU39166 False 238 lncRNA 0.36 2 14774282 14774641
TU39120 True 375 TUCP 0.41 2 14782131 14782656

Neighbor

gene id symbol gene type direction distance location
CI01000004_14770317_14773615 NA coding downstream 284 14770286 ~ 14774000 (-)
CI01000004_14758580_14768474 NA coding downstream 5604 14758528 ~ 14768680 (-)
CI01000004_14756092_14758171 NA coding downstream 16047 14755814 ~ 14758237 (-)
CI01000004_14754775_14755334 NA coding downstream 18535 14754747 ~ 14755749 (-)
CI01000004_14749034_14751685 NA coding downstream 20688 14748304 ~ 14753596 (-)
CI01000004_14794085_14794548 NA coding upstream 1248 14794032 ~ 14794593 (-)
CI01000004_14802126_14805324 NA coding upstream 8517 14801301 ~ 14805738 (-)
CI01000004_14808034_14808645 NA coding upstream 15154 14807938 ~ 14808969 (-)
CI01000004_14809409_14811408 NA coding upstream 16439 14809223 ~ 14811709 (-)
CI01000004_14815294_14818132 NA coding upstream 22358 14815142 ~ 14821516 (-)
G34479 NA non-coding downstream 67164 14706723 ~ 14707120 (-)
G34478 NA non-coding upstream 13217 14806001 ~ 14806506 (-)
G34474 NA non-coding upstream 44905 14837689 ~ 14838322 (-)
G34468 NA non-coding upstream 93041 14885825 ~ 14888056 (-)
G34470 NA non-coding upstream 96908 14889692 ~ 14893295 (-)
CI01000004_14742838_14744316 NA other downstream 29948 14742807 ~ 14744507 (-)
CI01000004_14676793_14679785 NA other downstream 94577 14676422 ~ 14679856 (-)
CI01000004_14827536_14831360 NA other upstream 34846 14827496 ~ 14831526 (-)
G34632 NA other upstream 218577 15011361 ~ 15025221 (-)
G34668 NA other upstream 258392 15051176 ~ 15052775 (-)
CI01000004_15086759_15087492 NA other upstream 293887 15086671 ~ 15087575 (-)
CI01000004_14775109_14792782 NA other upstream 7490 14774282 ~ 14792784 (-)

Expression


Co-expression Network