G34468


Basic Information

Item Value
gene id G34468
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14885825 ~ 14888056 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39111
GGGGTCAAAATCTGCTTGGTTACTGACATTCTTCCAAATATCTTCCTTTGTGTTCAGCAGAACAAAGAAATTCATACAGATTTGGAACAACTTGAGGGAAACTCATTTCTCTGTACATCACATCAAGTGAACAATGTACCTGAAATAATGACTGGCTGCAGCAAGGACCACGCGATGGCACTGGAAGCTCTGGCCCTGTACATGGAGACTGACGTCTGTTAAACTGTCCTCCAGCCGAAGACTGTGCAGTCCTTCCTGCAGATAACCAGCAAACACAGAGTCTTCAAACATAACCTGGCCATCTTCCCGGTTCTCCTGCATCGAGCTCTCCAGCATGCTCAGACCCCCTGCTGGAGCTTCTTTCGCGGCAGATGATGAAGGGCATTCGGAGTTATTCTCCAAAGTGTCAGCCATGATCTGGAGTCCCAGATGCAAAACTTAGAGATTTCGACGCTGAATAAAGTTTAACACCATGTGATTACTAGACATCGGCGAAACAATTGTTCTTTCCTAACACGCAAGCTTCCTGTTTTTAAAACGGCCTACAAAGAGGAAGTGCTGAAAACGTTCAAATTCATCTCTGCAACTACACAAGTTACTTGGATTATGGCTGATTCTGTTGTTTAAAACTTGTGCTTTTAAAGTAACTGTTTAAGGGAAATTAAGGGTAAATATATAATTTCACATGCTCAGGCTGTAAAACAGATCTCATTAAAAACCAAAATCTCTTAATTATACCTTTTTAGAAAACCTAAAAAGGTATATTATATTCTAGTAGATCATTAAACACTACAGTCTGACCAAACAGGATTCATGGCAATACACAAAACTCAATTAAATTGAGTCAGTACCACAACTATCTCTTTTAGGAGTCATAACAGAATGATGCAAGTTCTAGAAATTTACCAGTCAATGTTAGAGGTTCAACCATCTTTGCTCCAGGTCTATTTTAATAATAATAATTTACAAAGTATATGTTTTAAGATGGTTTCATCATTAACAAAAACATTGTATCTCATAGAAAACAAGCAGAAAACAGACAGAAAGTGTATTTTACTCAATTGGAATGTCTGAAAATGTCTCTCATTGAAATGTTATGTTAAAAAACAAGTTAGATTTAACATGCAAAAGAATGTAGCAAATTATTCATTTTTATGACAACCACTGAAGGCGCATTCAATTCTGGTATTCCGTCAAGATTGTTAGTTAAAAAATAAAATACTGTTTACATACATATAAATATAAAACAGCTAGTCAAAAATGTCCTGATTCTTGTTCTTTTCCCCATTTCGGTATGCTAATCAAAATACATAATATACAAAACGCTTTAATAAACTTTAGGTTTTGCAATAAAAAATTTAAAAACAGAAACGGTTCATTTAATTCCATACAGCAAAATTGTTCCATTTTGTTGAGAAAAGTGAAGGCAAAATAGGTAGTAGGCACAAGTGGCAGGTCAATATTAGAGGATGGGACAATTCAAGTATTACAATACTTCTCTGGAACATAAAAAAGGAAGGGGAAAAAGTACTTTGTTAGGCCAGAGCTCAACAATACTTGAAACTAATAAAATACAAGATAAATTTAGACAGAAAAGCATGAAATGTTCAGGTACACGATGGTGTCAAACCGTTTACATAAAACAAACAAAATGAGAGACATCAGTAGAAAACAAGAGAAGTCTACAGTCAGTGGCTCCTCTGGTTTTGTAGCCCCTTCAGGCACATTAAAGGAGAGTTTGGTGTGAGGAGGCAAGACATGGTGATTGTGCAAGTTAGTCGCCCAGGTGGGATTGACTAAGGTCTTCAGGGCTGAATAGCAAAGGCCCTTCGCGGGACTAGAAGGTGACTCTGCCGGAGTGATGGAAGTTCTCACAGGAACCGGTCGTGAGAAGTAATTTGGGCATTGGCACATAGTGACAAAGGGCTAGCGGTTACTCTTCATTGCCTCCTTGGCAGCAAGTATAAGGGGAGTGAGGCTGGAAAGAGGCTTCGCCAGCTTCAGGAAAGGATGCTGCAAGAGACGAAAGGACATTAGTACATTTTCTAGAAGGTTACC

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU39111 True 2058 lncRNA 0.38 2 14885825 14888056

Neighbor

gene id symbol gene type direction distance location
CI01000004_14860344_14863053 NA coding downstream 22377 14860286 ~ 14863448 (-)
CI01000004_14846825_14850092 NA coding downstream 34294 14846785 ~ 14851531 (-)
CI01000004_14843132_14843640 NA coding downstream 41846 14842913 ~ 14843979 (-)
CI01000004_14832429_14839825 NA coding downstream 45806 14832151 ~ 14840019 (-)
CI01000004_14827536_14831360 NA coding downstream 54299 14827496 ~ 14831526 (-)
CI01000004_14897662_14906408 NA coding upstream 9194 14897250 ~ 14906426 (-)
CI01000004_14951433_14957539 NA coding upstream 63120 14951176 ~ 14957841 (-)
CI01000004_14999971_15002640 SLITRK3B coding upstream 111219 14999275 ~ 15002640 (-)
CI01000004_15063428_15066310 NA coding upstream 175372 15063428 ~ 15066310 (-)
CI01000004_15068206_15086386 MAP1SB coding upstream 179699 15067755 ~ 15086519 (-)
G34474 NA non-coding downstream 47503 14837689 ~ 14838322 (-)
CI01000004_14815294_14818132 NA non-coding downstream 67669 14815142 ~ 14821516 (-)
G34478 NA non-coding downstream 79319 14806001 ~ 14806506 (-)
CI01000004_14775109_14792782 NA non-coding downstream 111184 14774282 ~ 14792784 (-)
CI01000004_14770317_14773615 NA non-coding downstream 114224 14770286 ~ 14774000 (-)
G34470 NA non-coding upstream 1636 14889692 ~ 14893295 (-)
G34550 NA non-coding upstream 22025 14910081 ~ 14912736 (-)
G34558 NA non-coding upstream 33012 14921068 ~ 14921339 (-)
G34635 NA non-coding upstream 92286 14980342 ~ 14995039 (-)
G34661 NA non-coding upstream 142389 15030445 ~ 15030741 (-)
CI01000004_14808034_14808645 NA other downstream 77296 14807938 ~ 14808969 (-)
CI01000004_14749034_14751685 NA other downstream 134106 14748304 ~ 14753596 (-)
G34632 NA other upstream 123305 15011361 ~ 15025221 (-)
G34668 NA other upstream 163120 15051176 ~ 15052775 (-)
CI01000004_15086759_15087492 NA other upstream 198615 15086671 ~ 15087575 (-)
G34718 NA other upstream 392960 15281016 ~ 15281649 (-)
G34633 NA other upstream 899330 15787386 ~ 15787897 (-)

Expression


Co-expression Network