CI01000004_15068206_15086386 (MAP1SB)


Basic Information

Item Value
gene id CI01000004_15068206_15086386
gene name MAP1SB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15067755 ~ 15086519 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15068206_15086386.mRNA
ATGCGTGCAACAAGGCGGTCTGAATCCTGCCTTCGATTGGTCAGCTTCAGTTTCATTCAAATTATCCGCCTGTTCCTTCAAAGATGCTTGAATCGAATGCTTGTGTATTACATCATAAGAATAACTTTCCAACATGGCGTCGGGTCTAACAGCAGCGATGGAAACAGAGGACCTGACAGCCCATCCTGGATTCAGCAATGACAAATACTCGATGTTGATTGTCATCGGTGCGCTTTATAGATCACATATACTGGACTATATTGTGGTGGAGATTGAACGAGGTATTCGTGCATGGGATGTGGACCTGACAGTGTGTAACTTGGATGAGCAGCTGAAGCTCTTCACTTCTCAGCATTCTTCTTATGAATCCAAAGATATAAGAGGTCAGAAGACATTTCATTTCAGTTCAGACGTACTGGACATTAAAGTTGTAGTAAATCCATCAGAAGGGTTACTCTACTCTGAGATTCAAGCTCTCTTAAACTCTGTAAGCACACATGGCAAAGCAAACCTCACCTTAAGCTGCCCTAAAATTGGAAAATGGAAAAACTCAGTGCTAGGGAAGCACAACATACATGACATTATCGACATTAAGGTGAATCCTCTAATGGTACTACCCAAAATGGGGGGCCTTCAAGAGTTCACGGACCACATTTTTGAGTCCTTGGAGCCACAGTCTCCATTTGATCTCTTAGAGCCGCCTGGCACAGTGGGATTTCTCAAGCTATGTCGTCCGTGCTGTTATGTCTTTCCAGGAGGGAGAGGCGACTGTGCCTTTTTTGCTGTCAATGGCTTTAATGTTTTGGTAAATGGTGGCGCAGATCCACGCTCTTGCTTCTGGAAGCTCGTCAGGCATTTGGACCGCGTTGACTCAGTGCTGCTTACACATGTTGGAACAGACAACCTGCCGGGAGTTAACAGCCTGTTGGAGAGGAAGGTCACAGAGCTTGAGGAAAATAAAACTGACTCACAGGAAAAGGAGCAATGGGCGAAGAATCTAATCTCTCCAGAGCTTGGTGTGGTTTTCCTAAATGCCCCAAACAGACTTAAAAAGCTTCAGGGTGATCCTAATGTACTACGAAGCAGTGATCTAGCAGGACTTATTTTACAGCATTTGGAAAAACTAAAGATCTCACCAGAACCGCTTTTTCGCAATTCAAGTGGCTCCATAGAGCCAGTTATTCTTTTCCAGAAAATGGGAGTGGGATGCCTTGAGCTTTACATCCTAAATCCAGTCAAACGTAGCAAAGAAGTAGAGTCTTTCATGAATAACTGGCCAGATAATAGTTCCAAATCCAAGAGTTTAGATGGCCACCTAACCTCTGTGGTCTCTATATGTGCTTTGCTTGTTTGGCACCCTGCTAACCCAGTGGAGAAAATCATCAGAGTTCTCTTCCCTGGCTCTACACCACAAGGAAAGATAATGGATGGTCTGGAGAGACTGAAGCATCTAGAGTTTCTCAAGCGCCCTGTAGTGTGCTCCAAAGATTTTGAAACAAAACAAGATAAAAATCCAAAAGCAGAGAGTCAGGACATTCCCAAATCTGTTAAAAATGAATCCAAACCAAGTAATGGTGCTTCAAAAGACCGAGCAGTTCGTGGAGATCTAGAGCTAAAAGACAAAACCAAGGGCATGAATGCGAATGATCTAAAAAGTGAAGAAAAGTTAAAATCTGTTGAAAGCAATGTGAAACATAAACCCTCCAGACTAGTTACAAGGAAGGAGTCTTTGAAGGACAAAAGCAATGAAAAAATAAACATATCAGACTCAAAGAAACAAGAAAACGGGCAGAGAGAAACGTCAGGTAGCAAAAATTCTTCAACGAGAAGACCAAAGTTAGATAGCAAACCCGAAGAGAGAAAAGCAACAAAGCCTCTTGGGAAAGAAATCAAGAAAACCTCCACAGGATTACTGAACTCAAATAAACCTGGAAACATAAAAAACGAAGCAAAATTACACAAACAGGCAGAGGACAAAGCCAAAAACTTTAAATCTAACAAGGAGCAGCAGAATCAGAAGTTGTCAACAGACTCAGAAGATGTAAATTGCTCCATAATGTCTTCACCAGAAGATATGACGGCAGATTTTCTGGAAATGGATCGAGAGCAACATGAATTACTCATGAAGAGGCAAATTGTTGACTCTGGGAACCTGAAAAATGTCTCAACAGGTAATGTGCAGTCTATGTGTAGTAGCACAGTAAAACCAAGCAAGTCCGGAGCATCTGCAAGACCCTTTGTCAAAATAAAAAATGAGCTCTGTGTGAATCTAGACCTCACTCCCACTGAGTATACTTTGCTTGATGGGGCTTCGAAAGATAATATTTCAAAAAATGGGCATGAGGAAGTTTGTGTCAGTCCCGATGAAAAGACGTTAGAGCTAACATCACCTAGATCAGGTCCAAATAGTGCTGGTCATACTCCTTATCACTTGTCACCTGAAGAGACCTGGGCCTCAAAAGATCATAGTAGTTTTGGCGTTAAGATGTGTCTTGGTTCAGAGAGCCAGCAGACGGGATTGTCCAAGTTTTCAGAGTCCGGATGCCCTAAAAGTAACCAAGAAAGTATCTCAACTTCCTCCAAAGAGAAGCATTCTAGTTTCCTGTCTCTCAGCTCTTTCAAGGATATAATGCCTGATATATCTCCCACTTTTACCACCACACACTCAATGCCTGCAGAAGTATGTTCACCACAGTCCACTGAGGTTGATGAGTCATTGTCGATGTCTTTTGAACAAGTGCTGCCAACGGTGAGCGAGTCCACCAACGAAGACGAAACATCTTACTCCAACGGACATCATGTCAATTCTGATTTCAAAGTAGGAATGTCTTTGTCTTTAAAGAAGCCTCACACCCAGAGGGCACCTAATGATGGCCCGGAAGGGTGTTCATCTGGACCGCATGGTCTAGTGTTTGACGCCACCCATGATGTTGATCTTTGCTTGGTCTCGCCATGCGAGTTCAAACATTTCAAACCGGTTGGCAATCAAGAGGTTCCACTGTCACCAGGTTTTAGTAACACCAGCCCGTTGAACCTTTCTGATGATAGTGACCACTCCCAAGAGGTAGCTAAGCCCCTTCCACCTTCATGTTCAGGTAACAAGGTCACTCATCCAGCTCAGGAGACCCCTCTCACTTCTGCCAGCGACTATTTTCAGATGGCAACAGATTCAGATATACATCCTGGTGTAGAGGATTGCCCATCCATTACTGCAGATGGACTTCTGGATTCTGATGAAGAAGGTGGTGTCCACCTGCAATCCCAGAACCTAAATGATGGTGTGAATGCTTGCAGAGGGAATCATCCTTTGCCGAAGGATCCCCCACCCGCACCTCTGAAAGACTTACCTCCTCTTCCACCTCAGCCTGGCGCTTGTATGCCTGATCCTGTCAGCAACGCAAAGCCTGGTGCAACAAAAGGCAGAAAAGCAGCAAGTGTTACACAGAGGTTAACATCTTCACAAGGCACCAAAACCAGGGCTGGTAGTCAAGGTTCTTCTGTTAGTGGCTCGAGAAGCAGCTCAGCAGGAGATATACTGGCTAGTCGAAGCACAGGCTCTGCTTCTAAACGATCCACAACTGCAGGTAGCAAGGTTGGTGCTTCAGTATACCTGGACCTCGCTTACCTTCCGTCAGGCCATGCAGCTTCCACTGTTGATGTTGAGTTTTTTTGCCGCTTGCGATCATCCTGTTACATATTAAGTGGGGACGACACACTCAAGGAAAGCTTGCTGAGGTCCATTCTGGATGCATTATTGGAGGGAAAATCTGTATGGCCTGAGGATGTGCCGGTGACCCTGATTCCCACGTTTGAATCACTGATGATGCACGAGTGGTATCGGGAAACTCAAGAAAAACAACGGCATCTGGGCATTACAGTCCTAGGCAGCAACAGCACTGTGGCTATGCAGGAGGAAACTTTCCCTGCTTGTAAAATCATTATGAGCACCATCACATCCAGCTTGACCAAATGGCAGAAGAAGAAGCTCTGCTCGTTGTTCAACCATGCCAACTTCAGCCTGCTGTTTAAAGCCAGTGTGCACGGCTACAATGCCACTACATTTCACCAAAAGTGTAATTATCAGGGACCGACTGTTATTGTAGCTTACAATAAGTCTGGATATGTTTTTGGAGCTTTTACCAGCAAAAATTATAGTCAAACAAACCAAAATGTTGTGGATGACAAAGCTTTTCTCTTCAGCTTTAATGACAAAGAGGTTAAAGAAGATCCTCTCCGTGTGTTCAGTGGAAATCCCCAGTATGCTTTCACTGACAGTGGTCCAAACTTTGGTTCTTTAGTGTTTTTTCACAATAACACAGCCACCATCCACAGTAATCCAGCAGCTGCATACAAATTCGACCCACAGCAGATGCATGGGAATGACTTACAGCTGACAGAATGTGAGGTGTACAGAGTTGAAGACTGTGGAGGACTCTTGGAGAAACCATGGAGAAATGTGCAGTGGTTCCTTGAGAGAAGGGAGGCACTCTTGAGCATCATCTCAGGCTGGAAGCCTTCTGTTAGCTCAGTTAAACAGGCTCGGATTCTACTGGTGGGTCCTGTTGGTGCTGGGAAATCAAGCTTCTTCAACTCAATCAACTCTGTATTCAAGGGATATGTGAGCATCCAGGCCAACACTGGCACTGCTGGAACCAGTTTGACTACTCAGTTCCGTACCTACTACATAAAGCCAGGCAGTGGTGTCAACCATGTTCCCTTCACTATGTGTGACTCGATGGGTCTGGAGGAGGGTTTGAACAGCGGTCTGGATGTAGATGATTTTGCCAGTATTTTGAAAGGTCACATTCAAGACAAGTATCAGTTTAACCCATCGATGCCTATACAGCCAGACTCCCCTCATTTCCGTAAATCTCCTGGCTTGAAGGACAAGATTCACTGTGTGGTGTATGTGATTGACACCAACAAAGTCAAGCTCCTCTCTGACAAAATGATCGAAAAGTTTGTGGTTTTTCGAAAGAAAACCAACCAGCTGGGTATTCCTCAGCTGGTTCTGCTGACTAAGGTGGATGAGGCCTGTTCCTTAGTGGCGGAAGACCTGAAAAATGTCTACCAGAGCCACTATATCAACAAAATGGTGCAGGAGGTGAGCGCTCAGCTTGGAGTCTCTCTGTCTGCCGTGATCCCGGTGAAAAACTACTACCAAGAACTGGAATTAGATCCTCAAACTGACATACTGCTTCTGAACGCTGTTGTTCAGATGCTCAGAGCCGCTGGGGGCTATTTTGATGATTTTTACAACCCAGAGGAGAAGTCTGAGTAGAGCTCAGTCTCTTTTCCCTGTCTGACCTGAAGGTTCTGGATGTATATTTGTATTAGCAAATCATATCTTTCTGTTTAGATAATCACATTTATATTTGTTACGGTCTGTGCTTTGGGTGTGTTTCTCTCTCTGTATGCGTGACATCATTACTCCTTTCATCTCTCTGAGTATGTGTTTGGGCCTTTGTGCACATGTGCTACTTATTATTTTTAATGTAAGCGCAGACGTGGCTGATGGTAAATTGAATGTGTCTGGATTCCAGTGTCATCCGCTTTATTATTTTCATGTATTGTCATAATTATAAACACACTGGTTTGTAGCTCAAATATATTTTAACCCTTTAGACACTTTGTTATTCTTCTAGTTTTTACCTATAGCGGCTAATGAATCAGAAGTCCTGCACATTCACAGAAAATAGCTTACTTCTGCTTTGCAAAATAAGGTGGATAAA

Function

symbol description
map1sb Predicted to enable actin binding activity and microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization; neuron projection development; and regulation of microtubule depolymerization. Predicted to act upstream of or within apoptotic process. Predicted to be part of microtubule associated complex. Predicted to be active in several cellular components, including dendrite; microtubule; and neuronal cell body. Orthologous to human MAP1S (microtubule associated protein 1S).

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K10429 MAP1; microtubule-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15068206_15086386.mRNA True 5732 mRNA 0.44 13 15067755 15086519

Neighbor

gene id symbol gene type direction distance location
CI01000004_15063428_15066310 NA coding downstream 1445 15063428 ~ 15066310 (-)
CI01000004_14999971_15002640 SLITRK3B coding downstream 65115 14999275 ~ 15002640 (-)
CI01000004_14951433_14957539 NA coding downstream 109914 14951176 ~ 14957841 (-)
CI01000004_14897662_14906408 NA coding downstream 161329 14897250 ~ 14906426 (-)
CI01000004_14860344_14863053 NA coding downstream 204307 14860286 ~ 14863448 (-)
CI01000004_15086759_15087492 NA coding upstream 166 15086671 ~ 15087575 (-)
CI01000004_15159447_15160043 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding upstream 72889 15159408 ~ 15160043 (-)
CI01000004_15186236_15193312 NA coding upstream 99420 15185939 ~ 15195460 (-)
CI01000004_15217903_15228632 NA coding upstream 131219 15217738 ~ 15228736 (-)
CI01000004_15255165_15256033 APODA.1 coding upstream 168424 15254943 ~ 15258227 (-)
G34674 NA non-coding downstream 5958 15061471 ~ 15061797 (-)
G34673 NA non-coding downstream 11143 15056278 ~ 15056612 (-)
G34670 NA non-coding downstream 13648 15053863 ~ 15054107 (-)
G34666 NA non-coding downstream 18615 15048712 ~ 15049140 (-)
G34664 NA non-coding downstream 28845 15038592 ~ 15038910 (-)
G34684 NA non-coding upstream 18946 15105465 ~ 15105702 (-)
G34575 NA non-coding upstream 23462 15109981 ~ 15146962 (-)
G34685 NA non-coding upstream 27076 15113595 ~ 15115349 (-)
G34701 NA non-coding upstream 93455 15179974 ~ 15180249 (-)
G34646 NA non-coding upstream 137142 15223661 ~ 15223942 (-)
G34668 NA other downstream 14980 15051176 ~ 15052775 (-)
G34632 NA other downstream 42534 15011361 ~ 15025221 (-)
CI01000004_14827536_14831360 NA other downstream 239632 14827496 ~ 14831526 (-)
CI01000004_14808034_14808645 NA other downstream 259226 14807938 ~ 14808969 (-)
CI01000004_14775109_14792782 NA other downstream 285099 14774282 ~ 14792784 (-)
G34718 NA other upstream 194497 15281016 ~ 15281649 (-)
G34633 NA other upstream 700867 15787386 ~ 15787897 (-)
CI01000004_15832789_15836192 NA other upstream 746054 15832573 ~ 15836231 (-)
G34796 NA other upstream 774094 15860613 ~ 15863748 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016637 zgc:153654 coding NC_007113.7 CM002886.2 36914408 ~ 36932253 (-)