CI01000004_15255165_15256033 (APODA.1)


Basic Information

Item Value
gene id CI01000004_15255165_15256033
gene name APODA.1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15254943 ~ 15258227 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15255165_15256033.mRNA
AGTTTTATATCCTTTACAAAATTGAGTTTATGAGGTGTGCCAACCGCCTCGGCCCCCATCACACCTCATGGGCCCAATGAGTAGATTATAACATAGCCTAATATATAACATGAGAAGAGGGACAACAGAAAATTCCTCAATTTAATCAATGTTCAGGCCCCACACGACATAACAGCAGAAACTCAAGGTAAATATGAGTTTTAAAATGGTTAATTGAGAACTGATCCAAATCAAACACAAATAAAAGCCACGATGAAGTGTCACAGATTGTTTGTGATCAGACAGATGAGCATCCTCATAAAGCGCCCTCTATCTGTCAGCATCACCATTACATGTTCAGTGTCAGATCATCACAACTCAGTTACTTTTCCCCAGTCAGCAATGTCCTAACCTTAGGTGATTTTTTTTTGGTTGAACTTCAAAAACACATATGGTATGTTTAAGAAAGAACAGAAAAAAGACTGTTTAGATGAAGCGACAGTGTAAGTTTAGTTTAGATATTCATTAATGGAGCATCCTCTCATGACTTCAATTTGCTTAATCACTTACTTCATGTTGGGAATAAACTGTGGACTCACAAAGATTCCTTCTTTTCTGCAGTCACATGATCCCAGAGAGAGAATGACTCTAATAAATACTCTGAGCTCCACAGTCCATCTCGGATTCAGCACAACTTTAAGAGGTAAGGATTTGTTTAATTTGTATTTGTCAAACTGTCTTTACAATGGTTGTTTACCATGGGATTGAATATGTACACTATCGTTCAAGAGTTTGTGGTCAATAATTTATTTTTTGGGGGAAAAAAATAATACTTTTATTCAGCAAGGATGCATTAAATTGATCAAAAACCACAGTTCAGATATTTATAATGTTACAAAAGGATTCTATTTCTAATAAATGCTGTTCTTTCTAACTTTTTATTCATCAAAGAATCATGAAAAAATGTATCAAGGTTTACACAAAAATATTAACCGTTTTCAACACGTTTTAACAATTTAAAAAAAATGTTTCTTGAGCATCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCCATCACAGGAATAAAATATATTTTAAAATATAGTAAAATAGAAAACAGTTATATAAACAGTATATATGTTTTATAAACAGTTATAAAACATAAAATATATTAATATTTCACAATATTACTGTATTTTTGATTAAATAAATTCAGCCTGGGCAAGCACAAGCGACTTCTTTCGAAAACTTTTGAATGGTAGGCTAGTGTATATATAGTGCATCTTAAGAACCAAAAACGATAACCATAACTATATTTGCGTCCACACCAACAAATGATAACGGTCTGTTTATTTTAAGCTCACGCGCTGCGGTTTCAAAGTGTGTACAACATGTTTTTGCTATTCTTGTTGCATTTACAGGCTTTAACCAGCAGATGTCCTCAGCATGCTATGTTTCGAGTGAATAGCTAGCGTAAGCGATCAAATCTAACAGTGAATTTAGCTGACGAAGTCAATATAGTCAAAGGAAGCAAGATTGTTGTCGAAACTATCGCTGGATACCTGAGGTAATTTTATACGTAACGTACACTGTTTGCGAGCCTGACATATCTCATCGTTAATACTTCTCACCATTTATTCCGAGGGTATGACCGACTGTTTTCCATGTATAAATTTTCTTTAAAGTATCCTTGAAAAGAGGGGTTGACTTGTCAAACAGTGGTGGCTTTTTCAGGACCTTGGCGGTTAATTTCTCCGCGATGTCGTCCGCCATTTTAAATGCGCGAGCGCTTAATTTAGAATGGATTCTGATTGGCTGACAGTGTTTTATCGTTCAACTGCTGGAAAAAAATCGTTCTGAAAGTGATCCCGACGATATCGTGTCTCTATATCGTTATCGTTAGAACTATTTAGAACGATTTTTAGAACGATATCTTTATCGTTATCTTTATAGTTATCGTTCTTGGTGTGAACAGAAGCCACAAACATATGCTGTATAACTTGAATGGATAATATATATATTTTGTTTTAAATTATATTACAGTTAAGTTTAGAAAATGTTTTCCATCCGGCTGTTGAGAATGCATGCAAATATTTAGTTGTCAACACTTAATAATTTACTATTCTATTCTCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAATGGGCATAAGCAAAATGAAGGCCTTTCTGGTAGTTTTGGCCCTGTTCATGCCCATCATAAATGCCCAGGTTCCTCACTGGGGGCCGTGCCCAGAACCTGCTACTCAACCTGCCTTTAACCTAAAGAAGTTTATGGGCAGGTGGTTTGAGATCGCTAAACTTCCAGCCCAGTTTGAGCGAGGGAGATGCATCGAGACTAACTTTACTCTCAAACTGGATGGAACGGCTCATGTAGTGAGCTCTGAAATTCTAAAAGGAGAACTAAGAACAATTGATGGGACATGTGTGGTGGAAGACAAAAAAAATCCAGCAAAGCTTGGAATCAGTTTCTCATATGTTTTGCCCTACACTCCATACTGGATTTTGTCCACTGACTATGAGAACTCAGCGCTGGTATATTCATGCACTGATGTCTTGAGACTCTTCCACGTAGACTTCGCTTGGATTCTGGGCCGCTCCCGATCCCTGCCTGCTGCCACCGTCGACCATGGAAAAGAGGTTTTTACCAATAACAACATCGATGTGAGTCGGATGATCTTAAGCAGACAGCAGGGATGTGACAAAGACCTCTGAATGACTGTCTTCCTGGAAAATCCAGTGTTGTGATATTTTGTTGAACAACCTGCAGACTACAAAAGTAGTATACTATTCCTTTTAATCACTGCTTGGATTATGAAAGTGTTTAATTTAACAACACTCCCCCCCAAGTTTCTGCAAACCAGTAATGTAATTCATCTGTTTTGGGAGTTACTGTACAGAATTGAAAACACAAGTTTTCCAATTGATCAAAATAAA

Function

symbol description
apoda.1 Predicted to enable lipid binding activity. Predicted to be involved in lipid metabolic process and response to reactive oxygen species. Predicted to act upstream of or within aging and lipid transport. Predicted to be located in extracellular region. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to human APOD (apolipoprotein D).

NR:

description
Zgc:153593

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
K03098 APOD; apolipoprotein D and lipocalin family protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15255165_15256033.mRNA True 2989 mRNA 0.37 4 15254943 15258227

Neighbor

gene id symbol gene type direction distance location
CI01000004_15217903_15228632 NA coding downstream 26207 15217738 ~ 15228736 (-)
CI01000004_15186236_15193312 NA coding downstream 59483 15185939 ~ 15195460 (-)
CI01000004_15159447_15160043 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding downstream 94900 15159408 ~ 15160043 (-)
CI01000004_15086759_15087492 NA coding downstream 167410 15086671 ~ 15087575 (-)
CI01000004_15068206_15086386 MAP1SB coding downstream 168424 15067755 ~ 15086519 (-)
CI01000004_15300222_15308848 NADK, NADKB coding upstream 41433 15299660 ~ 15308941 (-)
CI01000004_15326982_15360355 SKILA coding upstream 68632 15326859 ~ 15360355 (-)
CI01000004_15370117_15389832 PRKCI coding upstream 111527 15369754 ~ 15389832 (-)
CI01000004_15416876_15425066 NA coding upstream 158649 15416876 ~ 15425164 (-)
CI01000004_15429682_15430354 NA coding upstream 170291 15428518 ~ 15431049 (-)
G34572 NA non-coding downstream 763 15246506 ~ 15254180 (-)
G34646 NA non-coding downstream 31001 15223661 ~ 15223942 (-)
G34701 NA non-coding downstream 74694 15179974 ~ 15180249 (-)
G34575 NA non-coding downstream 107981 15109981 ~ 15146962 (-)
G34685 NA non-coding downstream 139594 15113595 ~ 15115349 (-)
G34711 NA non-coding upstream 1217 15259444 ~ 15259772 (-)
G34713 NA non-coding upstream 2053 15260280 ~ 15262403 (-)
G34714 NA non-coding upstream 12467 15270694 ~ 15270899 (-)
G34717 NA non-coding upstream 21716 15279943 ~ 15280142 (-)
G34611 NA non-coding upstream 28096 15286323 ~ 15292665 (-)
G34668 NA other downstream 202168 15051176 ~ 15052775 (-)
G34632 NA other downstream 229722 15011361 ~ 15025221 (-)
CI01000004_14827536_14831360 NA other downstream 426820 14827496 ~ 14831526 (-)
CI01000004_14808034_14808645 NA other downstream 446414 14807938 ~ 14808969 (-)
G34718 NA other upstream 22789 15281016 ~ 15281649 (-)
G34633 NA other upstream 529159 15787386 ~ 15787897 (-)
CI01000004_15832789_15836192 NA other upstream 574346 15832573 ~ 15836231 (-)
G34796 NA other upstream 602386 15860613 ~ 15863748 (-)
G34934 NA other upstream 1143518 16401745 ~ 16421506 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016647 apoda.1 coding NC_007113.7 CM002886.2 37207799 ~ 37210397 (-)