CI01000004_15370117_15389832 (PRKCI)


Basic Information

Item Value
gene id CI01000004_15370117_15389832
gene name PRKCI
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15369754 ~ 15389832 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15370117_15389832.mRNA
GGACATCATGATCACACATTTCGAGCCCTCCATCTCCTATGAAGGGCTGTGCAGTGAGGTGCGGGACATGTGCTCCATGGACAATGACCAGCTCTTCACCATGAAATGGATTGATGAAGAAGGGGATCCGTGCACCGTTTCTTCTCAGCTGGAGCTGGAGGAGGCCTTACGTCTCTATGAACTCAACAAAGACTCAGAGCTCATTATTCACGAGTCCATTTACCGTCGTGGAGCTCGACGCTGGAGGAAACTTTACTATGCCAACGGACATGCGTTTCAGGCCAAGCGCTTTAATAGGCGTGCTCATTGTGCCATCTGCACAGATCGTATCTGGGGCCTGGGCAGGCAGGGATACAAGTGCATAAACTGTAAACTGCTGGTTCATAAGAAATGCCATAAAATGGTCACAGTGGAGTGTGGTAGACAGGACCCAATGATTGGAAGAATCGATTCAGGGTCCACTCCATCAGAACACGCTGATCAAGTTCTAGACAAAAAGAACTCAACAGAAAGTATCAATCACGAGGGAGAGGAGCATGAGGCTGTGGGCAGTCGGGAATCAGGGAAGGCTGTGTCCAGTTTGGGGCTTATAGACTTCGACCTGCTCCGAGTGATCGGCAGGGGCAGCTACGCCAAGGTGCTGCTGGTGCGTCTCAAAAAGACAGACCGCATCTACGCCATGAAGGTGGTGAAGAAGGAGCTGGTGAACGATGATGAGGATATTGACTGGGTTCAGACAGAAAAGCATGTGTTTGAGCAGGCTTCCAACCATCCCTTCTTGGTGGGACTTCACTCCTGCTTCCAGACGGAGAGCAGGCTATTCTTTGTAATTGAGTATGTGAATGGAGGTGATCTCATGTTCCACATGCAGCGACAGAGAAAACTTCCGGAAGAGCATGCCAGGTTTTACTCAGCAGAGATCAGTCTTGCCTTGAACTACCTCCATGAGCGTGGCATCATTTACAGGGACCTGAAACTGGACAATGTTCTGCTGGAGTCAGAGGGACACATCAAACTCACTGATTACGGCATGTGTAAGGAGGGACTGAGACCAGGAGACACAACCAGCACTTTCTGTGGAACCCCCAATTACATTGCGCCTGAGATTCTGAGAGGAGAAGACTACGGTTTTAGTGTGGACTGGTGGGCACTGGGCGTCCTGATGTTTGAGATGATGGCTGGGAGGTCACCCTTTGATATAGTTGGCAGCTCTGATAACCCTGACCAAAACACAGAAGATTATCTTTTCCAAGTAATTTTGGAGAAGCAGATCAGAATTCCCAGATCATTATCGGTTAAAGCCGCTAGCGTGCTAAAGGGATTCCTTAACAAGGAGCCAAAGGAACGTCTCGGATGTCATCCTCAGACAGGCTTTGCAGACATAATGGGCCATCCTTTTTTCCGAAATGTAGACTGGGATCTTATGGAGCAGAAGCAAGTAGTCCCGCCCTTCAAGCCCAACATCTCTGGCGAGTTTGGGCTGGACAACTTTGATGCCCAGTTCACCAATGAGCCCATCCAGCTCACGCCTGACGATGATGATGCTGTAAAGAAGATCGACCAGTCTGAGTTCGAAGGCTTTGAGTACATCAACCCTCTGCTGATGTCGGCGGAGGAGTGTGTGTGAACGGCCTGTCTGTTTCTGTTACGTGCATATCATCGCTGCCTTTATTTGCATGGTCACAAACAATCGCAAGAAAGGAAACAACAACCTGACTTCATTTTGTTGGGACCAGATGAAACATTAACTTTGCCAAATCTCTTTCACTTTCTGCCATTTATAACCACTAGTCCTTAAGACAAAAAAAAAAATTCTTGATTATTTTTGTAAAATCAGCACTGATGAAATGAAACTTATCAGTGCCGCGTTGACTGACGTAGTTAAGTTACTGGACGCTCTGCAAACTAAAGGAGAAGAATGACTGTGATGGTACGCAGAACCTCCTAATGCTAATGACGTCTGATACACCTTTTATTTGTATATATTAAA

Function

symbol description
prkci Predicted to enable phospholipid binding activity and protein serine/threonine kinase activity. Acts upstream of with a negative effect on apical protein localization. Acts upstream of or within several processes, including animal organ development; digestive tract development; and morphogenesis of an epithelium. Located in zonula adherens. Is intrinsic component of plasma membrane. Is expressed in several structures, including blastoderm; common cardinal vein; eye; posterior lateral line primordium; and pronephric duct. Orthologous to human PRKCI (protein kinase C iota).

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component

KEGG:

id description
K06069 PRKCI; atypical protein kinase C iota type

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15370117_15389832.mRNA True 1990 mRNA 0.47 16 15369754 15389832

Neighbor

gene id symbol gene type direction distance location
CI01000004_15326982_15360355 SKILA coding downstream 9399 15326859 ~ 15360355 (-)
CI01000004_15300222_15308848 NADK, NADKB coding downstream 60813 15299660 ~ 15308941 (-)
CI01000004_15255165_15256033 APODA.1 coding downstream 111527 15254943 ~ 15258227 (-)
CI01000004_15217903_15228632 NA coding downstream 141018 15217738 ~ 15228736 (-)
CI01000004_15186236_15193312 NA coding downstream 174294 15185939 ~ 15195460 (-)
CI01000004_15416876_15425066 NA coding upstream 27044 15416876 ~ 15425164 (-)
CI01000004_15429682_15430354 NA coding upstream 38686 15428518 ~ 15431049 (-)
CI01000004_15434959_15441538 DAPK3 coding upstream 45047 15434879 ~ 15441538 (-)
CI01000004_15456870_15468826 NA coding upstream 66671 15456503 ~ 15468826 (-)
CI01000004_15483948_15538159 INSR, INSRA coding upstream 94116 15483948 ~ 15538159 (-)
G34634 NA non-coding downstream 51532 15316241 ~ 15318222 (-)
G34611 NA non-coding downstream 77089 15286323 ~ 15292665 (-)
G34717 NA non-coding downstream 89612 15279943 ~ 15280142 (-)
G34714 NA non-coding downstream 98855 15270694 ~ 15270899 (-)
G34713 NA non-coding downstream 107351 15260280 ~ 15262403 (-)
G34733 NA non-coding upstream 7974 15397806 ~ 15398008 (-)
G34734 NA non-coding upstream 8739 15398571 ~ 15398777 (-)
G34768 NA non-coding upstream 286740 15676572 ~ 15682517 (-)
G34613 NA non-coding upstream 303258 15693090 ~ 15694289 (-)
G34595 NA non-coding upstream 307173 15697005 ~ 15700776 (-)
G34718 NA other downstream 88105 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 279396 15086671 ~ 15087575 (-)
G34668 NA other downstream 316979 15051176 ~ 15052775 (-)
G34632 NA other downstream 344533 15011361 ~ 15025221 (-)
CI01000004_14827536_14831360 NA other downstream 541631 14827496 ~ 14831526 (-)
G34633 NA other upstream 397554 15787386 ~ 15787897 (-)
CI01000004_15832789_15836192 NA other upstream 442741 15832573 ~ 15836231 (-)
G34796 NA other upstream 470781 15860613 ~ 15863748 (-)
G34934 NA other upstream 1011913 16401745 ~ 16421506 (-)
G34982 NA other upstream 1112893 16502725 ~ 16515974 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location