CI01000004_15326982_15360355 (SKILA)


Basic Information

Item Value
gene id CI01000004_15326982_15360355
gene name SKILA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15326859 ~ 15360355 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15326982_15360355.mRNA
GGACTCCCGGTCGCGGGGTTGGTGAATGTCACACCGCGGGCGTTCAGCGCAGCTGTGCCCGGAGAAGGAGAGGGGAGAGACGGATAGAGTCGGGGACAGAGCCGCGGTGTCCTTGCGGGGATAAAAAAAGAGTCACACTTTCGTTCAGGGTTATAAATAGACAGCATTTTGTCAGTATTTCTGAAAATGGTTATTTTACGAGGAAACGAAACGACGTCCGCGGTCAGGATGTGGTGGTGTACAGTTATTACATCTTATTTCAAGCCTGCTGTGGTTTGGACAGGACTAAATGGCTGCTCGCTGTTGGTTATCTCAGTGTTAAACCGACGTTATTTCGAGAAAAGAAGGAGCAACCCAAAGGTGTCGTGTTTGAAGAACAGACGAATATTTTCCACCCAAGCAAGACCAGTAATCTGTGTACGGACATGGCCAGCCCTCAGACGAGTCTGAAAACCCCATTCAAAGACCTGACGTCATTCAAAGGCAACATGAAGCGGCTGTACAGGGAGCGACTGGAGGATGCACCCATTAAAAAGCGGGTAATGGCAGAGATGCACATGAAACGACGCAGCCTGGAGAGCGTCTCCAAACCCCCGAAGGTCAAGAAGGAGCGTGAGGAACACGCCAGCTCGGAAATGGACATCGAGGAAAGAGAATTCCACATGGTCGGGGCTTCCAAGGCTTTAGATCTCAGCGCTGGCCTCAAGCACACTCTGGCACAGTTCACGCTGAGCAGCCAGAGCTCCCTGGGAGGTCCTGCTGCCTTCTCAGCAAAATCGGCTCAGGAGTGCGCCTCTCCTGCTGGCATGGCTCCCCTGCCGTCTCCCCCAGTCCTTGGAGGAGGCCCGCTCTTGGTTCCCTGTGACAGCTCCACTGAGCTCACTCATTCTCTCCTCGAAGGGGAGTCCATCTCCTGCTTTGTTGTAGGTGGTGAAAAGCGTCTTTGTCTGCCACAGGTACTCAATTCGGTGCTGCGAGACTTCTCTTTGCAGCAGATCAACGCCGTCTGTGACGAACTTTACGTTTACTGTTCCCGATGTGATGCCGAGCAGCTCCACATCCTCAAGGTGCTGGGCATCCTGCCTTTCAACGCACCTTCCTGTGGCCTGATCACCCTAACGGATGCCCAACGGCTCTGCAACGCCCTGCTCCGCCCGGGTGCCACCCTCTCGGCCGACCCCAACAGCAAACTGGCAGGCCAAGGCCTGCTGAAGGAGAGCGAGGCCAGTTTCCAGGTGGAACACCAGTGTCTGGGCAAGTGCCAAGGCCTGTTTGTGCCCCAGTTCTATGTCCAGCCGGACGCTCCTTGCATTCAATGCATGGAATGCCAGCTGCTGTTTTCCCCACAGAACTTTGTAATGCACTCGCACAAATCCCCCGACAAGAGGACCTGCCACTGGGGCTTCGATTCAGCCAAGTGGCCTTGCTACCTACAGCTGGGCCGCAAGCACGAGGGCACGGCGGAGGAGCCCCAACTCAAACAGCTGCTGGATGAGATGAAGGAGAAGTTTCACTACCAGCTAAAGAGGCCTCTGGACAGAAAGGTGGTGGATGATGACGGTCACGGGAGGAAGTCCAGTCCTGCACCCTGCCCACCTAACAGCAAGCTGTCTGATAACGCCCTGGAGAAAAAGAAATATCTAATCACACCAGAGACCCAACAGTCATCTGGGTGTCACCCTGCGTCCTTCCGCTTTTCATTTTCGGGTGTTCTAATAACAAGTAGGCGGCGGCAGGGCAACTCGCAGTCTTCACTGGTTTTCAGTCGTCTCTTTCCCGATATCAAAGAGGAACCAGGACATGGCCCCATCATCCACCCGAGTTACTACCTGTACACGTACGATAAGATGGTGGCCCCTAACGTGTCCCTGCGGAAGGAGGCAGAGGTGAGCCATGAGGTTCTGGGTGCCCTGCTTAAACAACACTACAGCAGAAGAGCACTCACCCACGACAGCCAGCCCACCACAGGCTCCCTGTCTATCTCTCTTCCCCCGTCTCTCGTCCTCAATTCTTTCTCTTTCTTTCATGTAACCATTCTCCATTCAGGCTCCCCGTCTCTCTTCATCTGTATATCTCTCGTCTTCAGTCGGTCTCTTATTCTTCCATATCTTTCCGCATCTCCTTCCTCTGTCGCAGAGGAGGCCAAATCCCACCACACGGGCGAAGCGCACGAGCGCCGCCAACCTCCTCCGCCAGTCGCCATGGAGACTAGCTCGGGCGGCAAGCAGCACGCCCCCATTCCCACGGCGGGAAAAGACAGCGGAACGGAGGACGACAAGGACAGGATCATGCTGGAGATTGTGCAGATGTACCGGCGGCAGCAAGAGAAGCTCAATTCCACCCTTCAGAAACAGCTGCAGCTGGAGATGGAGCTGGAGGCAGTGCGCGGGGGTGAGGCAGCCAGGCTGAGGGAGTTGTCTGCGGAGCAGCTGGAGCTGCAGAACGAGCTGGAGGCGGTGCACACTGAGCATGCTCAGAGACTGGGGGAGGTGCGGCAGGAGCAGAGACAGCTGGAACACCGACTGGAGCAGCTCAGGCAGCAGAGCTGTGCCTGCCAACCCAAAGAACAGGAGGCGCAGTACAACGCGCAGCTGTGTGAGCTGCGGCGTCGTCTGGAGCGTGCCGAGGCGGAGCGGCAGGAACTGCAGGAGGAGCTGTGCAGAGAACGAGAGGCCAGAGAGAAGCTGGAGCTCATGATCTCACAGCTTCAGCTGCAGATGACCCAGTCTGGCACCAAGGGGAGCCGCAGCAGTAGCCCTGCCCAGCCCCCGACCCCCTCCGCAAGCCCCCAATCCCAGCATTCCCCCATTTCACCGGCCCCTGAGGTAACCTCCGGATAAACTGCTCACCCCCTCTCTCGCACACTTCCACGCCTGTAGCCCAGGAACACGCTTGCCCACTCCCTGCAGAGACACAGACAAACACAAGACAAGCTCTGCAGAAAAGAGCAGCTCTCCCATAAA

Function

symbol description
skila Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Predicted to be involved in negative regulation of BMP signaling pathway; negative regulation of transcription by RNA polymerase II; and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SKIL (SKI like proto-oncogene).

GO:

id name namespace
GO:0048666 neuron development biological_process

KEGG:

id description
K18499 SKIL; Ski-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15326982_15360355.mRNA True 2963 mRNA 0.57 11 15326859 15360355

Neighbor

gene id symbol gene type direction distance location
CI01000004_15300222_15308848 NADK, NADKB coding downstream 17918 15299660 ~ 15308941 (-)
CI01000004_15255165_15256033 APODA.1 coding downstream 68632 15254943 ~ 15258227 (-)
CI01000004_15217903_15228632 NA coding downstream 98123 15217738 ~ 15228736 (-)
CI01000004_15186236_15193312 NA coding downstream 131399 15185939 ~ 15195460 (-)
CI01000004_15159447_15160043 DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 coding downstream 166816 15159408 ~ 15160043 (-)
CI01000004_15370117_15389832 PRKCI coding upstream 9399 15369754 ~ 15389832 (-)
CI01000004_15416876_15425066 NA coding upstream 56521 15416876 ~ 15425164 (-)
CI01000004_15429682_15430354 NA coding upstream 68163 15428518 ~ 15431049 (-)
CI01000004_15434959_15441538 DAPK3 coding upstream 74524 15434879 ~ 15441538 (-)
CI01000004_15456870_15468826 NA coding upstream 96148 15456503 ~ 15468826 (-)
G34634 NA non-coding downstream 8637 15316241 ~ 15318222 (-)
G34611 NA non-coding downstream 34194 15286323 ~ 15292665 (-)
G34717 NA non-coding downstream 46717 15279943 ~ 15280142 (-)
G34714 NA non-coding downstream 55960 15270694 ~ 15270899 (-)
G34713 NA non-coding downstream 64456 15260280 ~ 15262403 (-)
G34733 NA non-coding upstream 37451 15397806 ~ 15398008 (-)
G34734 NA non-coding upstream 38216 15398571 ~ 15398777 (-)
G34768 NA non-coding upstream 316217 15676572 ~ 15682517 (-)
G34613 NA non-coding upstream 332735 15693090 ~ 15694289 (-)
G34595 NA non-coding upstream 336650 15697005 ~ 15700776 (-)
G34718 NA other downstream 45210 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 236501 15086671 ~ 15087575 (-)
G34668 NA other downstream 274084 15051176 ~ 15052775 (-)
G34632 NA other downstream 301638 15011361 ~ 15025221 (-)
CI01000004_14827536_14831360 NA other downstream 498736 14827496 ~ 14831526 (-)
G34633 NA other upstream 427031 15787386 ~ 15787897 (-)
CI01000004_15832789_15836192 NA other upstream 472218 15832573 ~ 15836231 (-)
G34796 NA other upstream 500258 15860613 ~ 15863748 (-)
G34934 NA other upstream 1041390 16401745 ~ 16421506 (-)
G34982 NA other upstream 1142370 16502725 ~ 16515974 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016649 skila coding NC_007113.7 CM002886.2 37307326 ~ 37353098 (-)