CI01000004_14832429_14839825


Basic Information

Item Value
gene id CI01000004_14832429_14839825
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14832151 ~ 14840019 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_14832429_14839825.mRNA
AGTACAGAGAAAACAAGAGAAAACAGTGAGTGTGATTGACTCTTTCTTCAGTTCCCCAAGTGTGAAATATAGACATGATGTTCTCAGAGAGGAGGGACTCAGAGTTCACAGATCTGACATGATCTAATCGTGTCTGAAAGAGACTGTGGATGAAACCATTCAGTCTGACTCTTCTCAGAGTGAACACTTGTACAATGAATCTTCATTCACTTATTCTGCTCTGTGCTTCAGCTGCTGCTGTCTTTGGAAATACCATCAAACCAGACACAACAGATGTTGGTGCTGATGAGGGACAAAATGTTAAGTTATCCTGTAGTTATTCCTCCCCTGGGGGTACAGATTATCTCTTCTGGTACCGTCAGTATGGAAGATCAAAACCTGAATTTCTTGTTTTCACCTTAAGTACTGCAACAGATCCTGAAATATCTAAAGTAGATTCAAGATTCTCTGTTAAAGTAACAAAAAAGGAACAAATCCACATGGATCTGGAGATCTCCTCTGCTGCAGTATCAGACTCTGCTCTGTATTACTGTGCTCTGAGGCCCACAGTCACAGGAAACACTGTAACTCTGTACAAAAACCTGTTACAAAACACTACAGATGGTTGCTACACCATAGACATATATTTTAAAAAGAGATGCACAGCACAGGACAATGTAATACAGTCCAAACCAGTTATGACCGCTTTTGAAGATGGAACAGCCACTCTTGACTGCACTTACAAAGCAACCAGCACTCAGTATTCAATCCTCTGGTACCAAAAGAAGACAAATGGATCACCAAAATACATGCTGATAAGACGTTCTGGATTGAGCAACAATGATGAAGAGTTGAAGGGGAGATTTAATGCCGTTCTCAACACATCTGCATCAACAGTCCCTCTGACAATCAAGGATCTGCGTGTGTCTGACTCTGCTGTGTACTACTGTGCCCTGAACCCCACAAGACTGTGGATGAAACCATTCAGTCTGACTCTTCTCAGAGTGAACACTTGTACAATGAATCTTCATTCAGTTATTCTGCTCTTTCTCTCAGCCGCTGCTGTATTTGGAAATGTCATCAAACCAGATGAAACAAATGTAGTTGCTGAGAAGGGTTCAAGTGTTACATTATCCTGTAGTTATTCCTCTACAACTACAGAAACTCTCTTCTGGTACCGTCAGTATGGAAGATCAAAACCTGAATTTCTTGTTTCCACCTTCAGTACTAAAAAAGAGCCTGAAGTATCTGAAGTAGATTCAAGATTCTCTGTTAAAGTAACAAAAAAGGAACAAATCCACGTGTATCTGGAGATCTCCTCTGCTGCAGTATCAGACTCTGCTCTGTATTACTGTGCTCTGAGGCCCACAGTCACAGGAAACACTGTAACTCTGTACAAAAACCTGTTACAATGAGAGAAACACAGAGACAGAGAAAAAATTGTGAAAAAAAAAACCTAGTATACAAATATTTACATAATCTAACACAAAAATGATAAAACAAAACAAAGCAACATTCTAAAAGTGAGTCATATATATATATATATTTTTATTACACAATCAGATGGCACTGTTTCAGTTGTGCAATACTTGCAGTTAACCATAAGAGGGCAGTAGTTACTCAATATTACCTTTGACAATACAGCAGCTGTTCATATCAATTGTTTACATTTTATATCAGATTTCATATTAAA

Function

NR:

description
T-cell receptor alpha variable region, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_14832429_14839825.mRNA True 1672 mRNA 0.39 6 14832151 14840019

Neighbor

gene id symbol gene type direction distance location
CI01000004_14827536_14831360 NA coding downstream 625 14827496 ~ 14831526 (-)
CI01000004_14815294_14818132 NA coding downstream 10635 14815142 ~ 14821516 (-)
CI01000004_14809409_14811408 NA coding downstream 20442 14809223 ~ 14811709 (-)
CI01000004_14808034_14808645 NA coding downstream 23182 14807938 ~ 14808969 (-)
CI01000004_14802126_14805324 NA coding downstream 26413 14801301 ~ 14805738 (-)
CI01000004_14843132_14843640 NA coding upstream 2894 14842913 ~ 14843979 (-)
CI01000004_14846825_14850092 NA coding upstream 6766 14846785 ~ 14851531 (-)
CI01000004_14860344_14863053 NA coding upstream 20267 14860286 ~ 14863448 (-)
CI01000004_14897662_14906408 NA coding upstream 57231 14897250 ~ 14906426 (-)
CI01000004_14951433_14957539 NA coding upstream 111157 14951176 ~ 14957841 (-)
G34478 NA non-coding downstream 25645 14806001 ~ 14806506 (-)
CI01000004_14775109_14792782 NA non-coding downstream 57510 14774282 ~ 14792784 (-)
CI01000004_14770317_14773615 NA non-coding downstream 60550 14770286 ~ 14774000 (-)
CI01000004_14758580_14768474 NA non-coding downstream 63620 14758528 ~ 14768680 (-)
G34468 NA non-coding upstream 45806 14885825 ~ 14888056 (-)
G34470 NA non-coding upstream 49673 14889692 ~ 14893295 (-)
G34550 NA non-coding upstream 70062 14910081 ~ 14912736 (-)
G34558 NA non-coding upstream 81049 14921068 ~ 14921339 (-)
G34635 NA non-coding upstream 140323 14980342 ~ 14995039 (-)
CI01000004_14749034_14751685 NA other downstream 80432 14748304 ~ 14753596 (-)
G34632 NA other upstream 171342 15011361 ~ 15025221 (-)
G34668 NA other upstream 211157 15051176 ~ 15052775 (-)
CI01000004_15086759_15087492 NA other upstream 246652 15086671 ~ 15087575 (-)
G34718 NA other upstream 440997 15281016 ~ 15281649 (-)
G34633 NA other upstream 947367 15787386 ~ 15787897 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016627 tradv36.2.12 coding NC_007113.7 CM002886.2 36600510 ~ 36600943 (-)