RNA id: TU38265


Basic Information

Item Value
RNA id TU38265
length 314
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G33758
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14588598 ~ 14589028 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTACTTCAGGCATGCAGAGGTTTCAGAGATAGTTCAACATAGTTGTTCATTTTTTTCCCTGTCAGAAATGATATTCCTATTTTGTCTGTGTCTTATCTCCCTCTTAATAGGTGATGTCTCTAGTGAGGGAATAGCACCAGTCTCTCCTAATGAATTTGTCTCAGAAGGTAAAACAATCACCCTGTCCTGCAATTACAATGGATCAACTGCTACAGATGCTCTCCACTGGTATCGTCAGTACCCGAGATCCAGACCAGACTTCCTGTTTCTGGTTAATGAAGCTAAATTTAAGCAACCAGCTGAGCCTCCAATTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38240 lncRNA downstream 30692 14557495 ~ 14557906 (-) True CI01000004_14557340_14560918
TU38131 lncRNA downstream 60971 14527408 ~ 14527627 (-) True G33650
TU38129 lncRNA downstream 62459 14525935 ~ 14526139 (-) True G33648
TU38119 lncRNA downstream 67020 14521367 ~ 14521578 (-) True G33638
TU38113 lncRNA downstream 89140 14497445 ~ 14499458 (-) True G33633
TU38275 lncRNA upstream 24088 14613415 ~ 14613445 (-) True G33768
TU38283 lncRNA upstream 29625 14618653 ~ 14618986 (-) True CI01000004_14618502_14618962
TU39083 lncRNA upstream 98409 14687437 ~ 14693318 (-) True G34461
TU39122 lncRNA upstream 117695 14706723 ~ 14707120 (-) True G34479
TU39155 lncRNA upstream 165897 14756376 ~ 14756654 (-) True CI01000004_14756092_14758171
CI01000004_14574723_14575066.mRNA mRNA downstream 13532 14573281 ~ 14575066 (-) True CI01000004_14574723_14575066
CI01000004_14571792_14572305.mRNA mRNA downstream 16172 14571741 ~ 14572426 (-) True CI01000004_14571792_14572305
CI01000004_14569847_14571236.mRNA mRNA downstream 17102 14569806 ~ 14571496 (-) True CI01000004_14569847_14571236
CI01000004_14563131_14563558.mRNA mRNA downstream 24797 14562069 ~ 14563801 (-) True CI01000004_14563131_14563558
CI01000004_14557340_14560918.mRNA mRNA downstream 27556 14557281 ~ 14561042 (-) False CI01000004_14557340_14560918
CI01000004_14591958_14594875.mRNA mRNA upstream 2248 14591276 ~ 14594875 (-) False CI01000004_14591958_14594875
CI01000004_14597582_14610531.mRNA mRNA upstream 8335 14597363 ~ 14610531 (-) True CI01000004_14597582_14610531
CI01000004_14611052_14612588.mRNA mRNA upstream 22024 14611052 ~ 14612588 (-) True CI01000004_14611052_14612588
CI01000004_14612987_14614652.mRNA mRNA upstream 23959 14612987 ~ 14614652 (-) False CI01000004_14612987_14614652
CI01000004_14618502_14618962.mRNA mRNA upstream 29128 14618156 ~ 14619037 (-) False CI01000004_14618502_14618962
TU38263 other downstream 2853 14585171 ~ 14585745 (-) True G33756
TU38261 other downstream 6725 14581406 ~ 14581873 (-) True G33755
TU38255 other downstream 9597 14578458 ~ 14579001 (-) True G33750
TU38247 other downstream 19334 14568793 ~ 14569264 (-) True G33746
TU38237 other downstream 37314 14550800 ~ 14551284 (-) True CI01000004_14543631_14551256
TU38268 other upstream 5539 14595070 ~ 14595126 (-) True G33761
TU38297 other upstream 48823 14637851 ~ 14638474 (-) True G33783
TU39081 other upstream 83511 14672539 ~ 14673015 (-) True G34459
TU39093 other upstream 90111 14679139 ~ 14679707 (-) True CI01000004_14676793_14679785
TU39139 other upstream 131170 14723108 ~ 14723219 (-) True CI01000004_14722691_14723147

Expression Profile