RNA id: CI01000006_11320839_11338355.mRNA


Basic Information

Item Value
RNA id CI01000006_11320839_11338355.mRNA
length 1994
RNA type mRNA
GC content 0.52
exon number 16
gene id CI01000006_11320839_11338355
representative True

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 11320462 ~ 11338355 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTTTAATAGTGGACCAGCTCAGCATGAGGATGCTGTCCTCTTGCTGCAAAATGACTGATATTATGACAGAGGGCATCACTATCGTTGAAGACATCAATAAACGAAGAGAGCCTCTCCCCTCCTTGGAGGCCATTTACCTGATCACCCCAACTGAGAAGTCTGTGCAGACTCTCATCAATGACTTCAAAGATCCCCATTCAGCGAAATATAAAGGGGCTCATGTGTTCTTCACTGACTCCTGCCCGGACCCCCTGTTTAATGAGGTGGTGAAGAGCCGTGCCTCCAAAACCATTAAAACCCTAAATGAGATCAACATTGCCTTCCTGCCCTACGAGTCCCAGGTGTTCTCTTTGGACAACTCTGATGCCTTCCAGAGTTTCTACAGCCCTCATAAGACACAGCTGAAGAACCCTGTGATGGAACGGTTGGCCGAACAGCTGGCAACACTGTGTGCCACGCTGAAGGAATACCCTGCCGTCCGATACCGAGGGGAGTATAAAGATAACGCCACTCTGGCTCAGTTGCTACAAGACAAACTGGATGCCTACAAGGCAGATGATCCCACAATGGGGGAGGGTCCAGACAAGGCTCGCTCTCAGCTCATTATTCTGGACCGGGCTTTCGACCCTGTCTCTCCTGTCCTGCACGAGCTCACCTTCCAGGCTATGGCCTATGACCTGCTGCCCATCGAGAATGATGTTTACAAGGAGGTGACACGCTCCCTGAAGGAATTTTCTGCCAGTAAACGGATGAACACTGGAGAGAAGACCACCATGAGGGATCTGTCTCAAATGCTGAAGAAGATGCCGCAGTATCAGAAAGAGCTCAGCAAGTACTCAACCCATCTGCAGTTGGCCGAGGACTGTATGAAGCACTACCAGGGAACCGTGGACAAGCTGTGCCGTGTAGAGCAGGATCTCGCTATGGGAACAGACGCAGAGGGTGAAAAGATTAAAGACCCCATGAGGGCCATCGTGCCAATCTTGCTGGATGCCAACGTCAGCACCTACGACAAGATCCGCATCATCCTGCTCTACATTTTCCTGAAGAACGGGATCACGGAGGAGAACCTTAACAAGCTGATCCAACACGCCCAGATCCCTCCTGAGGACAGTGAGATCATCACCAATATGGCTCACCTGGGCGTCCCAATCATCACAGATTCTACTCTCCGCAGAGGCAAGAAGCTCGATCGTAAGGAGCGTGTGAGCGAGCAGACCTACCAACTCTCTCGCTGGACCCCACTGATCAAGGATATCATTGAGGATGCTATTGAGGACAAGCTGGACACCAAACATTACCCATACATATCAACACGCTCGTCCTCTTCCTTCAGCACTTCTGCAGTCAGTGCCCGATATGGCCACTGGCACAAGAATAAAACCCCTGGAGAGTACCGCACAGGCCCTCGCATCATGGTCTTCGTCATCGGGGGCGCGTCCTTTAGCGAGATGCGCTGTGCCTATGAGGTCACACAGGCCAATGGCAAATGGGAGGCCATCGTTGGTTCTACTCACTTGCTCACCCCAACCAAATTTCTAATGGACCTGCGGCACCCCGACTTCCGAGAATCCACTAGGGTGTCCTTTGAGGACCCTGACCCCTCAGAAGAGTGAGAGAGAGAAAGAGGGAAGGGTGGGAGAGAGAAATCACACTCTGACAAAGTAAAGGCAGCCGAACAAAGAAACCCTTTCTGAACCCCCACAGCACAAGGGCTTTCTTTTCTTGCTCCTGTTACCACACTCTACCGTTTTATAACGCCACCACGCCTCAGGGATGGGTGTCCGGCTCCTGCCTCACTGAAAAGCCGACCTGCAAGTCTCATTCAGGCTCTGTCTTCTACTGGGACCAGCCAATATTGATCTGCCTCGATTGGCTGGCTGAATGCCCCATTCAGAACTGCAGTGGGCGGAGCCTTTTTTTGAGTGACAGATGCAGTAGGGGTCCTGACCCCATCCCTGTTGACCACATCCTCTTAGTTGGGTGGATTAAA

Function

GO:

id name namespace
GO:0045921 positive regulation of exocytosis biological_process

KEGG:

id description
K15292 STXBP1, MUNC18-1; syntaxin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54351 lncRNA downstream 27981 11291512 ~ 11292481 (-) True G47758
TU54350 lncRNA downstream 29511 11287635 ~ 11290951 (-) False G47758
TU54231 lncRNA downstream 204951 11111614 ~ 11115511 (-) True G47681
TU54223 lncRNA downstream 251414 11063673 ~ 11069048 (-) True G47673
TU54218 lncRNA downstream 264881 11054903 ~ 11055581 (-) True G47668
TU54403 lncRNA upstream 140751 11479106 ~ 11480792 (-) False G47806
TU54408 lncRNA upstream 140751 11479106 ~ 11482501 (-) True G47806
TU54414 lncRNA upstream 165223 11503578 ~ 11504962 (-) True G47812
TU54456 lncRNA upstream 302074 11640429 ~ 11641264 (-) False G47853
TU54457 lncRNA upstream 302074 11640429 ~ 11641264 (-) True G47853
CI01000006_10676705_10699710.mRNA mRNA downstream 620580 10676367 ~ 10699882 (-) True CI01000006_10676705_10699710
CI01000006_10499329_10508831.mRNA mRNA downstream 810807 10499295 ~ 10509655 (-) False CI01000006_10499329_10508831
CI01000006_10453630_10483241.mRNA mRNA downstream 836456 10453613 ~ 10484006 (-) False CI01000006_10453630_10483241
CI01000006_10402704_10447782.mRNA mRNA downstream 871361 10402695 ~ 10449101 (-) True CI01000006_10402704_10447782
CI01000006_10372387_10387314.mRNA mRNA downstream 932860 10372129 ~ 10387602 (-) True CI01000006_10372387_10387314
CI01000006_11388077_11391485.mRNA mRNA upstream 49139 11387494 ~ 11391485 (-) True CI01000006_11388077_11391485
CI01000006_11459706_11462546.mRNA mRNA upstream 120933 11459288 ~ 11462605 (-) True CI01000006_11459706_11462546
CI01000006_11530728_11535297.mRNA mRNA upstream 192011 11530366 ~ 11535900 (-) True CI01000006_11530728_11535297
CI01000006_11596063_11609407.mRNA mRNA upstream 257284 11595639 ~ 11609407 (-) True CI01000006_11596063_11609407
CI01000006_11627878_11631177.mRNA mRNA upstream 288839 11627194 ~ 11631177 (-) True CI01000006_11627878_11631177
TU54208 other downstream 287335 11030911 ~ 11033127 (-) True G47658
TU53918 other downstream 832027 10488238 ~ 10488435 (-) True G47397
TU52113 other downstream 3809506 7510829 ~ 7510956 (-) True G45821
TU51020 other downstream 4343590 6973224 ~ 6976872 (-) False CI01000006_06974359_06976736
TU54279 other upstream 312008 11650363 ~ 11654407 (-) True CI01000006_11651067_11653761
TU55106 other upstream 996054 12334409 ~ 12346649 (-) True G48451
TU55104 other upstream 1007837 12346192 ~ 12346649 (-) False G48451
TU55105 other upstream 1007904 12346259 ~ 12346649 (-) True G48451
TU55095 other upstream 1012404 12350759 ~ 12529810 (-) False G48450

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037333 False 1858 mRNA 0.51 19 NC_007132.7 13861677 ~ 13914352 (+)
bowfin (Amia calva) AMCG00020213 True 1647 mRNA 0.57 16 CM030127.1 13303410 ~ 13330177 (+)