RNA id: TU68711


Basic Information

Item Value
RNA id TU68711
length 606
RNA type TUCP
GC content 0.45
exon number 3
gene id G60359
representative True

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15646775 ~ 15651888 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAAGGTATATTGAGGCAAAGAAAGACCGAGTAACTGTTGTGTTCAGCACAGTCTTCAAGGATGACGACGATGTCATCATCGGGAAAGTGTTCATGCAGGAGTTTAAGGAGGGCAGGAGGGCCAGTCACACGGCTCCTCAAGTGCTGTTCAGTCACAGAGAACCTCCTCTGGAGCTGAAGGACACTGACGCCACAGTGGGAGACAACATCGGCTACATCACTTTTGTGCTGTTCCCCCGACACACCAATGCCAACACCAGAGACAACACCATCAACCTCATCCACACCTTCCGGGACTATCTGCACTACCACATAAAGTGCTCCAAGGCCTACATCCACACTCGTATGAGGTCCAAGACCTCAGACTTCCTCAAGGTACTCAACCGAGCTCGCCCAGATGCTGAGAAGAAAGAGATGAAAACTATTTCGGGCAAGACCTTCTCACGTTAAGGACATGATGTGCAATCACGAGACCAGCATCCATGGACTCCATTATACACCTCTGGCCAGTGATGTCGATCCTCCACATGGAATTTGCACCTCAACAGGGAGACAAATAAATTCCTCGCTTTGCATTTATAGGATAAATGTTATTTGTATGTTGGATAAACAGATTTTTTGATACACTCTTATGTTTCACTGTGTAGCTCTGTTGTCTGACAGTGTTTTATTGACATAGTCATGCAGTATTTTCCCTTTCCTCTTTTCCTTTTGCCTTCGTTTCGCCAAATGCATCAATAATGGACATCATGAAATGGTCATGAATAAACCAGTCTTCTATACAAGAGATTTTTTTTTGTCTGTTCCTTGGGGTAAAATCATTTAGTTTGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68792 lncRNA downstream 96896 15549582 ~ 15549879 (-) True G60439
TU68790 lncRNA downstream 98315 15548161 ~ 15548460 (-) True G60437
TU68731 lncRNA downstream 136423 15503406 ~ 15510352 (-) True CI01000009_15504401_15585060
TU68723 lncRNA downstream 326490 15311531 ~ 15320285 (-) True G60370
TU68783 lncRNA downstream 354090 15292447 ~ 15292685 (-) True G60430
TU68712 lncRNA upstream 6448 15662417 ~ 15662695 (-) True CI01000009_15654061_15662554
TU68828 lncRNA upstream 52035 15708004 ~ 15712147 (-) True G60468
TU68830 lncRNA upstream 62593 15718562 ~ 15719161 (-) True G60469
TU68729 lncRNA upstream 89499 15745468 ~ 15746486 (-) True G60376
TU68833 lncRNA upstream 94729 15750698 ~ 15750994 (-) True G60472
CI01000009_15504401_15585060.mRNA mRNA downstream 60946 15504346 ~ 15585829 (-) False CI01000009_15504401_15585060
CI01000009_15483720_15484321.mRNA mRNA downstream 162454 15483709 ~ 15484321 (-) True CI01000009_15483720_15484321
CI01000009_15318811_15390382.mRNA mRNA downstream 256393 15318811 ~ 15390382 (-) False CI01000009_15318811_15390382
CI01000009_15301177_15304489.mRNA mRNA downstream 342275 15301097 ~ 15304500 (-) True CI01000009_15301177_15304489
CI01000009_15229965_15235247.mRNA mRNA downstream 411247 15229657 ~ 15235528 (-) True CI01000009_15229965_15235247
CI01000009_15693066_15694538.mRNA mRNA upstream 37025 15692994 ~ 15694629 (-) True CI01000009_15693066_15694538
CI01000009_15716557_15721525.mRNA mRNA upstream 60508 15716477 ~ 15721596 (-) True CI01000009_15716557_15721525
CI01000009_15726357_15736168.mRNA mRNA upstream 70176 15726145 ~ 15736168 (-) True CI01000009_15726357_15736168
CI01000009_15784118_15789896.mRNA mRNA upstream 128111 15784080 ~ 15789896 (-) True CI01000009_15784118_15789896
CI01000009_15791178_15798430.mRNA mRNA upstream 134880 15790849 ~ 15798430 (-) True CI01000009_15791178_15798430
TU68714 other downstream 203728 15376260 ~ 15443047 (-) True G60362
TU68236 other downstream 514272 15132104 ~ 15132503 (-) True G59941
TU68092 other downstream 759311 14862397 ~ 14887464 (-) True G59811
TU67748 other downstream 1608902 14033564 ~ 14037873 (-) True G59490
TU67750 other downstream 1668161 13975388 ~ 13978614 (-) True CI01000009_13975122_13976026

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074758 False 1350 mRNA 0.47 10 NC_007120.7 48043162 ~ 48077034 (-)