Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU93964 |
| length | 784 |
| lncRNA type | antisense_over |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G82580 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 9366847 ~ 9388557 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU94024 | lncRNA | upstream | 127262 | 9239381 ~ 9239585 (+) | True | G82639 |
| TU94023 | lncRNA | upstream | 129639 | 9236988 ~ 9237208 (+) | True | G82638 |
| TU93972 | lncRNA | upstream | 171579 | 9041611 ~ 9130939 (+) | True | G82587 |
| TU94062 | lncRNA | downstream | 8375 | 9396932 ~ 9397195 (+) | True | G82676 |
| TU94080 | lncRNA | downstream | 49655 | 9438212 ~ 9478994 (+) | True | G82694 |
| TU95506 | lncRNA | downstream | 174497 | 9563054 ~ 9563353 (+) | True | G83958 |
| TU95557 | lncRNA | downstream | 213219 | 9601776 ~ 9602184 (+) | True | G84005 |
| TU95593 | lncRNA | downstream | 270750 | 9659307 ~ 9659737 (+) | True | G84023 |
| CI01000013_09279917_09290301.mRNA | mRNA | upstream | 76087 | 9279917 ~ 9290760 (+) | True | CI01000013_09279917_09290301 |
| CI01000013_09243644_09260619.mRNA | mRNA | upstream | 106228 | 9243644 ~ 9260619 (+) | True | CI01000013_09243644_09260619 |
| CI01000013_09178561_09180465.mRNA | mRNA | upstream | 185690 | 9177107 ~ 9181157 (+) | False | CI01000013_09178561_09180465 |
| CI01000013_09075883_09113011.mRNA | mRNA | upstream | 253564 | 9075825 ~ 9113283 (+) | True | CI01000013_09075883_09113011 |
| CI01000013_08943859_08944315.mRNA | mRNA | upstream | 422222 | 8942838 ~ 8944625 (+) | True | CI01000013_08943859_08944315 |
| CI01000013_09430170_09443518.mRNA | mRNA | downstream | 41613 | 9430170 ~ 9444023 (+) | True | CI01000013_09430170_09443518 |
| CI01000013_09681047_09683275.mRNA | mRNA | downstream | 292490 | 9681047 ~ 9683433 (+) | True | CI01000013_09681047_09683275 |
| CI01000013_10261599_10283287.mRNA | mRNA | downstream | 871714 | 10260271 ~ 10283967 (+) | True | CI01000013_10261599_10283287 |
| CI01000013_10335904_10336688.mRNA | mRNA | downstream | 947347 | 10335904 ~ 10336896 (+) | True | CI01000013_10335904_10336688 |
| CI01000013_10502138_10525511.mRNA | mRNA | downstream | 1112133 | 10500690 ~ 10525674 (+) | True | CI01000013_10502138_10525511 |
| TU93966 | other | upstream | 31899 | 9329329 ~ 9334948 (+) | True | G82581 |
| TU93521 | other | upstream | 1325504 | 8028338 ~ 8041343 (+) | True | G82168 |
| TU93312 | other | upstream | 2028608 | 7335945 ~ 7338239 (+) | True | G81994 |
| TU92936 | other | upstream | 3284480 | 6079666 ~ 6082367 (+) | True | G81666 |
| TU92951 | other | upstream | 3307351 | 6056662 ~ 6056782 (+) | True | G81681 |
| TU95556 | other | downstream | 213054 | 9601611 ~ 9602235 (+) | False | G84005 |
| TU95558 | other | downstream | 213054 | 9601611 ~ 9602184 (+) | False | G84005 |
| TU95773 | other | downstream | 642051 | 10030608 ~ 10036793 (+) | False | G84194 |
| TU95794 | other | downstream | 687897 | 10076454 ~ 10079336 (+) | True | G84215 |
| TU95833 | other | downstream | 826570 | 10215127 ~ 10215962 (+) | True | G84250 |
