RNA id: CI01000013_08943859_08944315.mRNA



Basic Information


Item Value
RNA id CI01000013_08943859_08944315.mRNA
length 1628
RNA type mRNA
GC content 0.37
exon number 2
gene id CI01000013_08943859_08944315
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8942838 ~ 8944625 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAAAAATTAACTTTGGTGTTTAATGCACAGAACTTTTAAAATAAAACTTATATAAATGTATCGTTTTCTTTGCAACATGCAATTGCCATGCAGTTTCATTCTAATTTGCATGTCCATCACAATATAATATAATATAAAGAATCAAAAACAAATGCTAACTAAATTTTGCTTTTATTGAAATGAAAATATGTCATGTCTATGTATAAAATGCTTAAATTTTAAAAAATGCAGATAAGACAAGTAATTTCACTCGGCGGCCATCTTTGAAGCGCCTCTCGGGCATCCAAGTGCAGCTCCTATCTCTTTGAATGGGGAAACATCAAATTCTCCAAAGTTGTTTGCCAAGCTTTCGATTAAATTTCATATTTGAAATCACCAATGAAATCTGACAACAACTGTCTCATAAATTTTGTTTCTAAACGCTCGAATCATGACAAAAAACGGTATTATTCAGGCTGGATCAAGCTAATGCGCATGCGCAGACCTAAATGCGCGTCTCTTGTGCCTCATTTCGGAGGCGCGCGTCTGACTGTTTCTATAGGAACCGGAGCTTCTAACGGCCGCTGCAGTGACGCGATGACTTTACCAATCGACGATTGGCTCTTATTTAGAAGGCGGGACTTATTCCGCCATATTGCGCGTTGCACTTTCACCCATTCAAAACAATACGAGTGACGCATCTTGTGTTATTCTATAGTCTTTAATTTAAACAAAATTGATCTTTTTGACAATATATTTTAACGTCATAAAAATGTTTCACCATGTGGTTTCTCTTACAGTCTTTATCAATATTTTTATGGTATATTGTTTTGTTTTTTTATGTGTATGGGCTTTGTAAAGCTCAATAGTTGTTTTTGCAAACCAGGTGGGGAAAAAAATCATAGGGATTAGGCCTAATGCTTTACGGAAAGAAAAAAAAAGTTCTAAGCACAAAGCAAAAAAGAAATGCTGACTTTAAAAAATAACGTGGTACTGGCGAATGATATTTAAGAAAAAACCTGAAATCTTCTAACAAAAATGGCCTCGTTTCCTGAGAATGACCTGGATTTTTGTCAAAACCTGATCCTAAATCTACAAGATGACTTATCCTACTGCATTGAAGTTGTTAAATTCAGTTTAAATGAATTATTACTACAGGCATTGGGGTGTAGTCATAGTTGGCCCCTGAACAGTCGGAGAGATGGCGTACTAGTGCAGGCTATAGTTGGCAAAGGCAAGGACGCTATTGCTAGAAGTGCCACCCCGCTCCAAAAAACATTGGCAAGACTCCCAGAGATAACTTCTGTCCTGATCTTTCTCTCTGTGTCGCTGTAGCTATGATCTGGAGCGGCTCCTGCCTCTGCTTCTCTGAGTGCTGTCAAGAACCGTCTCTCGCCTCTGCTGGACACTTAGCGCATCTTATAGTCGTGAGCGATAGCGGCCTCACATAGCTGACCTTTAAAATCCAGCTCAAAGGTAAAGTCCAGATCACGCTGGATAGAAAAAGGAAAAAACAGAAACGTTAAACTGCAGAATCATTATAACAATTTGAGTAAAGGAAGTTGAAATGAATTATACACTACCATTCAAAAGTTAGAGTTATTGAATTATAATTGATCAAATTAATCAAAAGTGACAGTAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU93907 lncRNA upstream 32212 8910397 ~ 8910626 (+) True G82526
TU93882 lncRNA upstream 96778 8834072 ~ 8846060 (+) True G82503
TU93832 lncRNA upstream 241999 8700616 ~ 8700839 (+) True G82453
TU93811 lncRNA upstream 281682 8609024 ~ 8613121 (+) True G82432
TU93504 lncRNA upstream 637436 8252713 ~ 8305402 (+) True G82155
TU93938 lncRNA downstream 37598 8982223 ~ 8982501 (+) True G82557
TU93972 lncRNA downstream 96986 9041611 ~ 9130939 (+) True G82587
TU93997 lncRNA downstream 120508 9065133 ~ 9074576 (+) True G82612
TU94005 lncRNA downstream 192358 9136983 ~ 9138445 (+) True G82620
TU94023 lncRNA downstream 292363 9236988 ~ 9237208 (+) True G82638
CI01000013_08925040_08937556.mRNA mRNA upstream 3915 8924561 ~ 8938923 (+) True CI01000013_08925040_08937556
CI01000013_08652173_08660558.mRNA mRNA upstream 281767 8652173 ~ 8661071 (+) False CI01000013_08652173_08660558
CI01000013_08530191_08551478.mRNA mRNA upstream 391217 8529349 ~ 8551621 (+) True CI01000013_08530191_08551478
CI01000013_08519555_08527531.mRNA mRNA upstream 415127 8519110 ~ 8527711 (+) True CI01000013_08519555_08527531
CI01000013_08485928_08493559.mRNA mRNA upstream 449215 8485401 ~ 8493623 (+) True CI01000013_08485928_08493559
CI01000013_09075883_09113011.mRNA mRNA downstream 131200 9075825 ~ 9113283 (+) True CI01000013_09075883_09113011
CI01000013_09178561_09180465.mRNA mRNA downstream 232482 9177107 ~ 9181157 (+) False CI01000013_09178561_09180465
CI01000013_09243644_09260619.mRNA mRNA downstream 299019 9243644 ~ 9260619 (+) True CI01000013_09243644_09260619
CI01000013_09279917_09290301.mRNA mRNA downstream 335292 9279917 ~ 9290760 (+) True CI01000013_09279917_09290301
CI01000013_09430170_09443518.mRNA mRNA downstream 485545 9430170 ~ 9444023 (+) True CI01000013_09430170_09443518
TU93521 other upstream 901495 8028338 ~ 8041343 (+) True G82168
TU93312 other upstream 1604599 7335945 ~ 7338239 (+) True G81994
TU92936 other upstream 2860471 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 2883342 6056662 ~ 6056782 (+) True G81681
TU92027 other upstream 4106606 4835078 ~ 4836232 (+) True G80845
TU93966 other downstream 384704 9329329 ~ 9334948 (+) True G82581
TU95556 other downstream 656986 9601611 ~ 9602235 (+) False G84005
TU95558 other downstream 656986 9601611 ~ 9602184 (+) False G84005
TU95773 other downstream 1085983 10030608 ~ 10036793 (+) False G84194
TU95794 other downstream 1131829 10076454 ~ 10079336 (+) True G84215

Expression Profile