RNA id: TU93907


Basic Information

Item Value
RNA id TU93907
length 230
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G82526
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8910397 ~ 8910626 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAAGCTACTAAAGACATATTTAAAACAGTTCATGTGACTACAGTGGTTCAACCTTAATGTCATGAAGCGATGGCAATACTTTTTGTGCGCCAATAAACAAAATAACAACTTTATCTAGTGATGGGCGATTTCAAAACACTGCTTCATGAAGCTTCAAAGCTTTACAAATCTTTTGTTTCGAATCAGTGGTTTGGAGCATGTATCAAACTGCCAAAATCACACCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93882 lncRNA upstream 64337 8834072 ~ 8846060 (+) True G82503
TU93832 lncRNA upstream 209558 8700616 ~ 8700839 (+) True G82453
TU93811 lncRNA upstream 249241 8609024 ~ 8613121 (+) True G82432
TU93504 lncRNA upstream 604995 8252713 ~ 8305402 (+) True G82155
TU93515 lncRNA upstream 680269 8228727 ~ 8230128 (+) True G82162
TU93938 lncRNA downstream 71597 8982223 ~ 8982501 (+) True G82557
TU93972 lncRNA downstream 130985 9041611 ~ 9130939 (+) True G82587
TU93997 lncRNA downstream 154507 9065133 ~ 9074576 (+) True G82612
TU94005 lncRNA downstream 226357 9136983 ~ 9138445 (+) True G82620
TU94023 lncRNA downstream 326362 9236988 ~ 9237208 (+) True G82638
CI01000013_08652173_08660558.mRNA mRNA upstream 249326 8652173 ~ 8661071 (+) False CI01000013_08652173_08660558
CI01000013_08530191_08551478.mRNA mRNA upstream 358776 8529349 ~ 8551621 (+) True CI01000013_08530191_08551478
CI01000013_08519555_08527531.mRNA mRNA upstream 382686 8519110 ~ 8527711 (+) True CI01000013_08519555_08527531
CI01000013_08485928_08493559.mRNA mRNA upstream 416774 8485401 ~ 8493623 (+) True CI01000013_08485928_08493559
CI01000013_08448494_08481411.mRNA mRNA upstream 427486 8447275 ~ 8482911 (+) True CI01000013_08448494_08481411
CI01000013_08925040_08937556.mRNA mRNA downstream 13935 8924561 ~ 8938923 (+) True CI01000013_08925040_08937556
CI01000013_08943859_08944315.mRNA mRNA downstream 32212 8942838 ~ 8944625 (+) True CI01000013_08943859_08944315
CI01000013_09075883_09113011.mRNA mRNA downstream 165199 9075825 ~ 9113283 (+) True CI01000013_09075883_09113011
CI01000013_09178561_09180465.mRNA mRNA downstream 266481 9177107 ~ 9181157 (+) False CI01000013_09178561_09180465
CI01000013_09243644_09260619.mRNA mRNA downstream 333018 9243644 ~ 9260619 (+) True CI01000013_09243644_09260619
TU93521 other upstream 869054 8028338 ~ 8041343 (+) True G82168
TU93312 other upstream 1572158 7335945 ~ 7338239 (+) True G81994
TU92936 other upstream 2828030 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 2850901 6056662 ~ 6056782 (+) True G81681
TU92027 other upstream 4074165 4835078 ~ 4836232 (+) True G80845
TU93966 other downstream 418703 9329329 ~ 9334948 (+) True G82581
TU95556 other downstream 690985 9601611 ~ 9602235 (+) False G84005
TU95558 other downstream 690985 9601611 ~ 9602184 (+) False G84005
TU95773 other downstream 1119982 10030608 ~ 10036793 (+) False G84194
TU95794 other downstream 1165828 10076454 ~ 10079336 (+) True G84215

Expression Profile