RNA id: TU92951



Basic Information


Item Value
RNA id TU92951
length 121
RNA type TUCP
GC content 0.48
exon number 1
gene id G81681
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6056662 ~ 6056782 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTGAAAAGATGTCAAAAAATCTTTGGATGTTTTTTCTGCAGGTGACAGGGTTTGACAGTGTGGATGATGAGTCCAAACACAGTGATCACTTATTCACCTATAAGAGTCCAAAACCAGAAGAGTGGACCATGGAGGAAAACCCACCATACACTTACTACCTCTTCCACATGTATGCCAACATCATGGTCCTCAACAACCTACGAAAGGAACGTGGTCTCAATACCTTCCAGTTCCGTCCTCACTGTGGCGAGGCAGGATCCATCACCCATCTGGTGTCAGCCTTCCTCACAGCTGACAACATCTCTCATGGACTCAATCTGAAGAAGAGTCCTGTGCTGCAGTACCTGTTTTACTTGGCCCAGGTGCCCATTGCCATGTCTCCACTCAGCAACAACAGCCTGTTCCTGGAGTATTCCAAGAATCCCCTCAGGGAGTTCCTGCAAAAGGGCCTGTGTGTGTCCCTCTCCACAGATGACCCATTACAGTTCCACTACACAAAGGAGGCCTTGATGGAGGAGTACGCCATAGCAGCACAACTGTGGAAACTGAGCACATGTGATGTGTGTGAGATCGCCAGAAATAGTGTGCTTCAGAGCGGGCTGTCTCATCAGGAGAAGAAACACTTCCTGGGTGAGAATTATCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92947 lncRNA upstream 5908 6028609 ~ 6029518 (+) True G81677
TU92949 lncRNA upstream 23656 6030192 ~ 6032642 (+) True G81679
TU92894 lncRNA upstream 263597 5792238 ~ 5792701 (+) True G81630
TU92892 lncRNA upstream 265603 5779007 ~ 5790695 (+) True G81628
TU92880 lncRNA upstream 287313 5768785 ~ 5768985 (+) True G81616
TU92935 lncRNA downstream 19066 6079666 ~ 6082044 (+) False G81666
TU92942 lncRNA downstream 23978 6083474 ~ 6084895 (+) True G81672
TU93021 lncRNA downstream 271544 6331040 ~ 6331644 (+) True G81738
TU93037 lncRNA downstream 292409 6351905 ~ 6352119 (+) True G81754
TU93045 lncRNA downstream 322326 6381822 ~ 6426042 (+) True G81762
CI01000013_06038814_06043689.mRNA mRNA upstream 11062 6038814 ~ 6045236 (+) False CI01000013_06038814_06043689
CI01000013_06025196_06025887.mRNA mRNA upstream 29458 6024703 ~ 6026840 (+) True CI01000013_06025196_06025887
CI01000013_05953069_05974101.mRNA mRNA upstream 81447 5953069 ~ 5974851 (+) True CI01000013_05953069_05974101
CI01000013_05947579_05951579.mRNA mRNA upstream 103689 5947579 ~ 5952609 (+) True CI01000013_05947579_05951579
CI01000013_05939966_05944534.mRNA mRNA upstream 111640 5939966 ~ 5944658 (+) True CI01000013_05939966_05944534
CI01000013_06076169_06080164.mRNA mRNA downstream 15904 6075400 ~ 6080361 (+) False CI01000013_06076169_06080164
CI01000013_06132773_06163282.mRNA mRNA downstream 73069 6132565 ~ 6163637 (+) True CI01000013_06132773_06163282
CI01000013_06209318_06233289.mRNA mRNA downstream 149600 6209096 ~ 6233383 (+) True CI01000013_06209318_06233289
CI01000013_06278898_06283356.mRNA mRNA downstream 219402 6278898 ~ 6285154 (+) True CI01000013_06278898_06283356
CI01000013_06311729_06313001.mRNA mRNA downstream 252233 6311729 ~ 6314124 (+) True CI01000013_06311729_06313001
TU92027 other upstream 1220066 4835078 ~ 4836232 (+) True G80845
TU91262 other upstream 1990469 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 2471514 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 3589127 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 5103329 946521 ~ 952969 (+) True G77695
TU92936 other downstream 19066 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 1276449 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 1968842 8028338 ~ 8041343 (+) True G82168
TU93966 other downstream 3269833 9329329 ~ 9334948 (+) True G82581
TU95556 other downstream 3542115 9601611 ~ 9602235 (+) False G84005

Expression Profile