RNA id: CI01000016_03559585_03560912.mRNA



Basic Information


Item Value
RNA id CI01000016_03559585_03560912.mRNA
length 752
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000016_03559585_03560912
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3559326 ~ 3561090 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATAAACTTACACCAATACCACTGTCTGTCATTGTTCCAAACCACAATGCTTTCCTGTCATCTTTTCCTCTGTGTGAGATTATAGCTCTCTAGGAGCTCACAAGCCACATGCACATGTACTGTCAATGCATCCAAACATTATGCACATGGTTTTTCAGTGTTCGACTTGTTTCTGTTGAAATGAAGTGAGCGGTGTCAGAACAGCTGACATAGTGGATAGCTGACCTTTATCAGATCAACACATTGAACGTGAACAATGACACCAATTCTTTCAGAAGGAACAGAGGTGGGTGGCAGATGCATGAAAAGACAACAAGGAATGAAATTGTTTTCCCACAGTCTGCATGTGTCTGTGATGCAAGACAGACCGTTGAAGGATGATGGTTACTGCACATGTACAACCGCTGTTAAGCCTCTGAGCAGCTTCTTTTGCAGCACTCTTCATTTGCTCTTGCAGCTGCAGGAAGTTGAGCAATTCAGCCCACAACTGTGCCACAGAATAACAACCAGGTCGTGTATGATCAGTTTTGCTTTGTATTGTGGCCTCCATCTACAGGCCCCTGTATCTTGAATTTATGTAAATGATGCTTGATGACGACTAACAGGTTAAAAAAATGCTCATGCAGTAGCTGTTTGCAAAGATGTCCTTGGCATTTCTGGGTCATGGTTTGCAAGATTCTAAAATTATGCAGTCTATTATTCAGCTGGTGCTTTTGGTTTCAGTTGAAGCATCGGTCAATGCTAGTCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108650 lncRNA upstream 28389 3530583 ~ 3530937 (+) True G95524
TU108648 lncRNA upstream 30771 3528024 ~ 3528555 (+) True G95522
TU108647 lncRNA upstream 35238 3523721 ~ 3524088 (+) True G95521
TU108646 lncRNA upstream 35966 3523150 ~ 3523360 (+) True G95520
TU108644 lncRNA upstream 47684 3511408 ~ 3511642 (+) True G95518
TU108620 lncRNA downstream 72545 3633635 ~ 3633998 (+) True G95494
TU108664 lncRNA downstream 108615 3669705 ~ 3727497 (+) False G95533
TU108665 lncRNA downstream 108615 3669705 ~ 3675574 (+) False G95533
TU108666 lncRNA downstream 108615 3669705 ~ 3687594 (+) True G95533
TU108725 lncRNA downstream 205908 3769802 ~ 3770227 (+) True G95588
CI01000016_03546616_03553250.mRNA mRNA upstream 5577 3546616 ~ 3553749 (+) True CI01000016_03546616_03553250
CI01000016_03503738_03504907.mRNA mRNA upstream 54419 3503672 ~ 3504907 (+) True CI01000016_03503738_03504907
CI01000016_03267301_03268376.mRNA mRNA upstream 290935 3265145 ~ 3268391 (+) True CI01000016_03267301_03268376
CI01000016_03190518_03261836.mRNA mRNA upstream 297083 3190166 ~ 3262243 (+) True CI01000016_03190518_03261836
CI01000016_03158359_03165518.mRNA mRNA upstream 393504 3158359 ~ 3165822 (+) True CI01000016_03158359_03165518
CI01000016_03565923_03571228.mRNA mRNA downstream 3910 3565000 ~ 3571637 (+) True CI01000016_03565923_03571228
CI01000016_03572467_03575117.mRNA mRNA downstream 11377 3572467 ~ 3575187 (+) True CI01000016_03572467_03575117
CI01000016_03592692_03617887.mRNA mRNA downstream 31530 3592620 ~ 3617959 (+) True CI01000016_03592692_03617887
CI01000016_03628266_03631245.mRNA mRNA downstream 67176 3628266 ~ 3631927 (+) True CI01000016_03628266_03631245
CI01000016_03638070_03640560.mRNA mRNA downstream 75700 3636790 ~ 3641199 (+) True CI01000016_03638070_03640560
TU106281 other upstream 2631794 905400 ~ 927532 (+) True G93406
TU108565 other downstream 301085 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 711546 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 1273468 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 1658790 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 1844779 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile