RNA id: TU110385


Basic Information

Item Value
RNA id TU110385
length 627
RNA type TUCP
GC content 0.40
exon number 4
gene id CI01000016_05325805_05330265
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5325519 ~ 5332874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATTCAGTGCGCTTAGAAAGTCTTTCGAGAGGACGTTACGATAAGGGCATAGCAAGAGACCTATTATCTTTGACTGAAGATGGCTGATGTTATTGAGGACAAGATCAAGAACTACAGAACGGCTCCATTCGATGCCCGTTTTCCAAACACTAATCAGACAAGAAACTGTTTCCAAAATTACCTTGACTTCCACAGGTGTAATAAGGTTTTGTCAAGCAAAGGGCAGGAAACTTCTCCCTGCGAATGGTATCAGAGAGTGTACAAGAGCCTGTGTCCAATGAGCTGGGTGGAGAAATGGGATGGACAGATTGAGGATGGAAGCTTCCCTGGAAAGATCTAAATGGTCTCTGTTACCTTCAATTCATGGACTCCCAACATTTTGTAGAGTACCTCATAATAATTATCCAATTTTGATGTTGTCTTAGTTATTGGTTTGCCCGCTGGAGGATGAAAGGTCATTCAGAGTGCAACTTGGAATCATGTGACCTTTTGACCTTTAGCATTTTGAGGTCCTACATTAGCATCACGCTTTGTGTCACTACATCTTACTGTTGCAATTTACAAAATAAAACGCACAATTTGAATTGATTTCAATGGGGTTTTTTTTTTTTTTTAAATAAAGTGCA

Function

GO:

id name namespace
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02267 COX6B; cytochrome c oxidase subunit 6b

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110387 lncRNA downstream 120706 5192792 ~ 5204813 (-) False G97012
TU110388 lncRNA downstream 120706 5196398 ~ 5204813 (-) True G97012
TU110525 lncRNA downstream 134091 5191026 ~ 5191428 (-) False G97139
TU110530 lncRNA downstream 134091 5191226 ~ 5191428 (-) True G97139
TU110521 lncRNA downstream 202043 5123080 ~ 5123476 (-) True G97135
TU110539 lncRNA upstream 10193 5341039 ~ 5341800 (-) True G97148
TU110408 lncRNA upstream 14555 5345401 ~ 5349517 (-) True G97032
TU110551 lncRNA upstream 71297 5402143 ~ 5402369 (-) True G97160
TU110556 lncRNA upstream 80809 5411655 ~ 5411920 (-) True G97165
TU110571 lncRNA upstream 222449 5553295 ~ 5553986 (-) True G97180
CI01000016_05313099_05322439.mRNA mRNA downstream 2572 5312803 ~ 5322947 (-) True CI01000016_05313099_05322439
CI01000016_05249001_05286683.mRNA mRNA downstream 38836 5247560 ~ 5286683 (-) True CI01000016_05249001_05286683
CI01000016_05233964_05243756.mRNA mRNA downstream 81151 5233656 ~ 5244368 (-) True CI01000016_05233964_05243756
CI01000016_05208242_05218239.mRNA mRNA downstream 105703 5207419 ~ 5219816 (-) True CI01000016_05208242_05218239
CI01000016_05205373_05206602.mRNA mRNA downstream 118917 5205331 ~ 5206602 (-) True CI01000016_05205373_05206602
CI01000016_05374626_05378364.mRNA mRNA upstream 42999 5373845 ~ 5378673 (-) False CI01000016_05374626_05378364
CI01000016_05412782_05415867.mRNA mRNA upstream 81402 5412248 ~ 5415867 (-) False CI01000016_05412782_05415867
CI01000016_05426889_05429942.mRNA mRNA upstream 94930 5425776 ~ 5429942 (-) True CI01000016_05426889_05429942
CI01000016_05461674_05464777.mRNA mRNA upstream 130828 5461674 ~ 5464777 (-) True CI01000016_05461674_05464777
CI01000016_05468882_05473383.mRNA mRNA upstream 137917 5468763 ~ 5473383 (-) True CI01000016_05468882_05473383
TU110416 other downstream 402115 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 1394468 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 1660206 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 2339878 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 3049244 2270836 ~ 2276275 (-) True G94786
TU110396 other upstream 81413 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 828140 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 3557987 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 3605943 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 3904150 9234996 ~ 9239929 (-) True G98679

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020619 False 845 lncRNA 0.40 4 NC_007127.7 12504929 ~ 12512576 (-)
grasscarp (Ctenopharyngodon idella) TU165381 True 2311 lncRNA 0.40 1 CI01000028 2185836 ~ 2188146 (+)
tiger barb (Puntius tetrazona) TU165381 True 643 TUCP 0.42 4 NC_056714.1 13606627 ~ 13609407 (+)