RNA id: TU139963



Basic Information


Item Value
RNA id TU139963
length 241
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G123256
representative True

Chromosome Information


Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2624595 ~ 2624835 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTGGCACAAACTGTTAGTAAATCTTGCCCATACACTGACAAATTGTAAAGTTGAACACACTGTGAATATTTGTGTTTGTATTTATTTTACACAGAGCGTTAAAACATTTTTTGTCAGTTTCATCACAAAAGTATAAATGTTATTTCCGTGAATTTTTTTTTTTTTTTTTTTTTGGTATTTAAGGAATTTAGGATTTTTTTTTTTAAATCTATATTGAAGCATTTCTTGTCTTAACAGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU139954 lncRNA downstream 44088 2580165 ~ 2580507 (-) True G123247
TU139953 lncRNA downstream 44123 2580165 ~ 2580472 (-) False G123247
TU139938 lncRNA downstream 67811 2556554 ~ 2556784 (-) True G123235
TU139924 lncRNA downstream 82492 2539014 ~ 2542103 (-) True G123225
TU139931 lncRNA downstream 86511 2535337 ~ 2538084 (-) True G123229
TU139947 lncRNA upstream 25015 2649850 ~ 2693018 (-) True G123243
TU140031 lncRNA upstream 153623 2778458 ~ 2779425 (-) True G123324
TU140029 lncRNA upstream 157195 2782030 ~ 2782980 (-) True G123322
TU140041 lncRNA upstream 158836 2783671 ~ 2783972 (-) True G123334
TU140045 lncRNA upstream 163179 2788014 ~ 2788239 (-) True G123338
CI01000024_02597194_02605289.mRNA mRNA downstream 19306 2596751 ~ 2605289 (-) True CI01000024_02597194_02605289
CI01000024_02555602_02562403.mRNA mRNA downstream 61663 2555283 ~ 2562932 (-) True CI01000024_02555602_02562403
CI01000024_02484606_02498687.mRNA mRNA downstream 125409 2484209 ~ 2499186 (-) False CI01000024_02484606_02498687
CI01000024_02421600_02456292.mRNA mRNA downstream 168303 2421600 ~ 2456292 (-) True CI01000024_02421600_02456292
CI01000024_02402657_02417463.mRNA mRNA downstream 206534 2402413 ~ 2418061 (-) True CI01000024_02402657_02417463
CI01000024_02659912_02681156.mRNA mRNA upstream 34825 2659660 ~ 2684099 (-) False CI01000024_02659912_02681156
CI01000024_02712596_02739960.mRNA mRNA upstream 87038 2711873 ~ 2739960 (-) True CI01000024_02712596_02739960
CI01000024_02761265_02771248.mRNA mRNA upstream 136017 2760852 ~ 2771248 (-) True CI01000024_02761265_02771248
CI01000024_02771915_02777060.mRNA mRNA upstream 146971 2771806 ~ 2777060 (-) True CI01000024_02771915_02777060
CI01000024_02829108_02838763.mRNA mRNA upstream 203811 2828646 ~ 2839196 (-) True CI01000024_02829108_02838763
TU139935 other downstream 69559 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 1797744 823733 ~ 826851 (-) True G121380
TU140468 other upstream 1311207 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 4732402 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 4732870 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 4732919 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 5350832 7975667 ~ 7976047 (-) False G125798

Expression Profile