RNA id: TU140027



Basic Information


Item Value
RNA id TU140027
length 221
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G123320
representative True

Chromosome Information


Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 2790176 ~ 2790396 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATCCCTGTCAGTCAAGGCCTGGTTGAGCTCTTTCTCCAGACTCTTGATGTCTTGATCTGTGGAACGCTGCAGTTCTTCTAGCCTACACTGCGTCTCAGACAGAGCTGCTTCAGCCTCAGTGAGGGCAACTTGGGTATCACTCAGTTTAAGATGGGCATCATTTAATTTACTCTCAAGTTCAGTTTTTGCCTCTTCAGCCTCCAATAGCAACTTGCCTTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU140024 lncRNA downstream 333 2789609 ~ 2789843 (-) True G123317
TU140046 lncRNA downstream 1029 2788916 ~ 2789147 (-) True G123339
TU140045 lncRNA downstream 1937 2788014 ~ 2788239 (-) True G123338
TU140041 lncRNA downstream 6204 2783671 ~ 2783972 (-) True G123334
TU140029 lncRNA downstream 7196 2782030 ~ 2782980 (-) True G123322
TU140026 lncRNA upstream 1050 2791446 ~ 2791674 (-) True G123319
TU140047 lncRNA upstream 1941 2792337 ~ 2792766 (-) True G123340
TU140025 lncRNA upstream 2618 2793014 ~ 2793218 (-) True G123318
TU140033 lncRNA upstream 3507 2793903 ~ 2794268 (-) True G123326
TU140020 lncRNA upstream 4024 2794420 ~ 2794822 (-) True G123313
CI01000024_02771915_02777060.mRNA mRNA downstream 13116 2771806 ~ 2777060 (-) True CI01000024_02771915_02777060
CI01000024_02761265_02771248.mRNA mRNA downstream 18928 2760852 ~ 2771248 (-) True CI01000024_02761265_02771248
CI01000024_02712596_02739960.mRNA mRNA downstream 50216 2711873 ~ 2739960 (-) True CI01000024_02712596_02739960
CI01000024_02659912_02681156.mRNA mRNA downstream 106077 2659660 ~ 2684099 (-) False CI01000024_02659912_02681156
CI01000024_02597194_02605289.mRNA mRNA downstream 184887 2596751 ~ 2605289 (-) True CI01000024_02597194_02605289
CI01000024_02829108_02838763.mRNA mRNA upstream 38250 2828646 ~ 2839196 (-) True CI01000024_02829108_02838763
CI01000024_02849288_02866286.mRNA mRNA upstream 58704 2849100 ~ 2866404 (-) True CI01000024_02849288_02866286
CI01000024_02939122_02964449.mRNA mRNA upstream 147987 2938383 ~ 2964449 (-) False CI01000024_02939122_02964449
CI01000024_03048421_03049271.mRNA mRNA upstream 257768 3048164 ~ 3049529 (-) False CI01000024_03048421_03049271
CI01000024_03060967_03068650.mRNA mRNA upstream 270416 3060812 ~ 3069706 (-) True CI01000024_03060967_03068650
TU139935 other downstream 235140 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 1963325 823733 ~ 826851 (-) True G121380
TU140468 other upstream 1145646 3936042 ~ 3937057 (-) True G123701
TU142441 other upstream 4566841 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 4567309 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 4567358 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 5185271 7975667 ~ 7976047 (-) False G125798

Expression Profile