RNA id: TU142338


Basic Information

Item Value
RNA id TU142338
length 1358
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G125374
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 7029690 ~ 7031113 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGCATATCCGGCCAGCCACTGAGAGTACACGTTTTCTGAGTTGGGGATTGTAGGAGTTGGAAGATCAAGGTCTTTTTCCACCTTGATGCGTTTGGAGAGAGGGCTGTCAGATCCTGGACTTCTGGCAAGAAGTTTTCTCGAGAGGTCATCGTTTGGGTAGGAGGCTGTTCCATTTACGATGGGTTCATAACCCTCGTTGACTTGATCAGACTCTTTTGGGGAATCGTCACAACCTGTCTCACTAGCTGATCTGTGGTCCCCTCGTTTGTAAAGTTTTAGGGCATCTCGATAGTCCTGAATTCCCTCCACACTTTTGTTGTGTCGCTGTCTATTGTTCTCGTGGTGACGTGCACCTTCTAGGCTCAAGCTAAATTTTATATCATTCCTCTCGCCGACCTCACTCTCCTCCTCCTCCTCCTCTTCCTCTTCATCTTCGTCATCTTCCTCTTGTCCATTTTCTGGGATTATGCCGTTGTTCTCACTTTTAAACTTTGCCACCACGGATTTGAGAGCATTGGTGGCACTGCTTAGCAGATCACTTGTGCCTGGCTCAGGTGAACTGGCAGTTGAAAGGCCATCATCAGATTTGGAGGTAGTGGAGGAGGATTTGTGCCGATGAGTCTTCATGTGGCGCTTCAACTTGCTGGCCTGGGTGCAGGCATGGTTGCAGAGGTGGCACTTGTAAGGTTTCTCTCCGGTATGACTGCGCCTGTGGACGATTAAGTTGCTCTGGAACTTAAAAGACTTTCCACAAAACTCACAAGACTTTGCCTTCACAGTTGGCATGGTTGGCGTTTGTTGAGTGGGTGTTGAATGAGGTCCAGAAGGAGAATGAGATGCCCCTGGCTGGAATGGCTGCAACAGCCTTTGCATAGGGCTAGGCCTGTTGGGCGACATGGGCGGAGAGGAGCCAGCAGAGTTGCCTGCAAGTTCCCGTAGTCGTCTCGAGAAGTCCATAGATGGGGAGTCCAAGGGTACCGAATTAAGACGCAGTACCCTGTCAAAGGCGCTTGGGTGGTGGGGGGCCAAAGCCAGATCATCTGGGCTCATGTGATGCCGTGGTGGGGGACTAAAGAGTGGAGGTGTCCTGGGATATCGGCCTTCCCTAGGAACCGAGGACCCATCTCTGTTGGCTATCCTCATCAGGCTATAGGGACTACTGTCTGCAAGGTGGGCTGCATGCAGCGGTGGCTGTGAGGCACAGTCACCACCCATGCCTGGAGCGGAGGCCACCCGAGGAGTTAACGGGCTTCCAGGTTCACTCTCCAGATATATTCGGAAACCATGAGTATTCTGGGCATGCTGTAGCAGGAACCAAGCAGTGCTGAAGGGCTGCTTACAAGTTGTGCAAGTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142279 lncRNA downstream 44087 6983629 ~ 6985603 (-) True G125318
TU142317 lncRNA downstream 63694 6965785 ~ 6965996 (-) True G125356
TU142316 lncRNA downstream 64101 6965350 ~ 6965589 (-) True G125355
TU142274 lncRNA downstream 141533 6885162 ~ 6888157 (-) True G125315
TU142309 lncRNA downstream 147695 6881747 ~ 6881995 (-) True G125348
TU142344 lncRNA upstream 11286 7042399 ~ 7042692 (-) False G125379
TU142343 lncRNA upstream 11295 7042408 ~ 7042692 (-) True G125379
TU142395 lncRNA upstream 70572 7101685 ~ 7101920 (-) True G125425
TU142355 lncRNA upstream 82030 7113143 ~ 7114886 (-) True G125385
TU142359 lncRNA upstream 97709 7128822 ~ 7130004 (-) True G125389
CI01000024_06987928_07001260.mRNA mRNA downstream 28332 6987456 ~ 7001358 (-) True CI01000024_06987928_07001260
CI01000024_06944906_06955771.mRNA mRNA downstream 73919 6943962 ~ 6955771 (-) True CI01000024_06944906_06955771
CI01000024_06909681_06921880.mRNA mRNA downstream 107810 6909322 ~ 6921880 (-) True CI01000024_06909681_06921880
CI01000024_06889558_06901776.mRNA mRNA downstream 127189 6889447 ~ 6902501 (-) True CI01000024_06889558_06901776
CI01000024_06867041_06878399.mRNA mRNA downstream 150877 6867041 ~ 6878813 (-) True CI01000024_06867041_06878399
CI01000024_07117698_07119483.mRNA mRNA upstream 86003 7117116 ~ 7120003 (-) True CI01000024_07117698_07119483
CI01000024_07131727_07169937.mRNA mRNA upstream 99900 7131013 ~ 7169937 (-) True CI01000024_07131727_07169937
CI01000024_07239312_07251354.mRNA mRNA upstream 206429 7237542 ~ 7251865 (-) True CI01000024_07239312_07251354
CI01000024_07293038_07298458.mRNA mRNA upstream 261736 7292849 ~ 7298458 (-) True CI01000024_07293038_07298458
CI01000024_07300290_07303945.mRNA mRNA upstream 268230 7299343 ~ 7305514 (-) True CI01000024_07300290_07303945
TU140468 other downstream 3087766 3936042 ~ 3937057 (-) True G123701
TU139935 other downstream 4474654 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 6202839 823733 ~ 826851 (-) True G121380
TU142441 other upstream 326124 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 326592 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 326641 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 944554 7975667 ~ 7976047 (-) False G125798

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062306 True 2605 mRNA 0.52 3 NC_007117.7 6491013 ~ 6541519 (+)