RNA id: TCONS_00062306


Basic Information

Item Value
RNA id TCONS_00062306
length 2605
RNA type mRNA
GC content 0.52
exon number 3
gene id XLOC_031809
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6491013 ~ 6541519 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGGACGGTCAAGTTCGCTGGCACGTCACGTCCGCACTTGAACTTGCAGCAGCTCAGGGGGCTTCGCTTACTTTCCATTCCTGTCTTGCATTCTCCTCCAAGAAGCCATGAAGCCCAACACAAGCGTCTTTTCGCCAGTACAAGCGTCTTTTCTGTACTATTCTCTATAATTCATGTGGGATACCCGATGCATCGCTGAAGAAGATTTTTACTCTGGACACCCTGAAGACTCTGGCGCTTCCCAATGTGAGCCCAGCTGAGACCGAGTCCAACATGTCTCGCCGCAAGCAGGGCAAACCCCAGCACTTAAGCAAACGGGAGTTTTCGCCCGAGCCCGTGACGGCAGATATCCCAGAGGACGGGGAAAGCAATCCCGGATCAGAACCATCCACCCCTAAAGGGGACCAGGACCTCCTCACCTGTGGTCAGTGCCGCTCCAGGTTTCCTTTGGCCGACATCCTGGTGTTCATTGAGCACAAACGCAGGCAGTGTCAAGGGCGCCTATGCATGGACAAAAGTTCAGACCTGCCACCATCGCCTCCCCCCGCAGGCCTGCGGCGAGCCTGCATCCCAGTGGAGGTGGCGGTTCAAGTTTCGCCCCACGGAGAGGAGCGTTTAGCCTCCACGCCACATGGATTACGGCCCAAGCAGGAGAATTTATCAGaaAAAGATGAGCCCAGCAGCTACACTTGCACAACCTGTAAGCAGCCCTTCAGCACTGCTTGGTTCCTGCTACAGCATGCCCAGAATACTCATGGTTTCCGAATATACCTGGAAAGCGAACCTGGAAGCCCATTAACTCCCCGTGTGGCCTCTGCTCCAGGCATGGGTGGTGACTGTGCCTCTCAGCCACCTATACATGCAGCCCATCTAGGAGACAGTAGTCCTTATAGCCTGATGAGGATAGCCAACAGAGATGGCTCCTCTGTTCCTAGAGAAGGTCGATATCCCAGGACGCCTCCACTCTTTAGTCCCCCACCTCGGCATCATATGAGCCCAGACGATCTGGCTTTGGCCCCCCACCACCCAAGCGCCTTTGACAGGGTACTGCGTCTTAATTCGGTACCCTTGGACTCCCCATCTATGGACTTCTCGAGACGACTACGGGAACTGGCAGGCAACTCTGCTGGCTCTTCTCCACCCATGTCGCCCAACAGGCCCAGCCCTATGCAAAGGCTGCTGCAGCCATTCCAGCCAGGGGCATCTCATTCTCCTTCTGGTCCCCGTTCAACACCTACACAGCAAACACCCACCCTGCCAACTGCAAAAGCAAAATCCTGCGAGTTCTGTGGGAAGTCCTTTAAGTTCCAGAGCAACTTAATTGTCCATAGGCGTAGTCAtaccggagagaaaccttacaagtgccACCTTTGCAACCATGCCTGCACGCAGGCCAGCAAGTTGAAGCGCCACATGAAGACCCATCGGCACAAATCCTCCTCCACTACCTCCAAATCAGACGATGGCCTTTCAACTGCGAGTTCACCTGAGCCAGGAACGAGTGATTTGCCAAGCAGTGCCACCAATGCTCTTAAATCAGTGGTTGCAAAGTTTAAAATCGAGAACAATGGCATGATCCCTGAAAATGGACAAGAGGAagatgaagaagaggaagaagaggaggaggatgaagaggaggaagaggaggaggaagatgaagaagaagaagaggaggaggaggagaatgaAAGTGAGGCTGGTGAAAGGAATGATATAAACTTTAGCTTGAGCCTAGAAGGTGCACGTCATCACGAGAACAATAGACAACGACACAACAAAAATGTGGAGGGAATTCAGGACTACCGAGAAGCGCTCAAACATTACAAACGAGGCGACCACCACAGATCAGCTCACGAGACATTTGGTGACAGTTCCCCAAAAGAGTCTTCTCAAGTCAACGAAGGGTACGGACACATCGTTAATGGGTCGGCGTCCTACTCAAATGATGACCTCTCAAGAAAACTTCTCGCTGGAAGTCCAGGTTCTGACAGTCCTCTAACTAAGCGAATCAAGGTGGAAAAAGACCTTGATCTTCCAACTCCTACAATTCCCAATTCAGAAAATGTGTACTCACAATGGCTGGCTGGATATGCCGCTTCGCGCCAGCTCAAGGATCCTATCCTCAACTTTGGGGACTCAAGACAATCACCTTTCGCCACCTCTTCAGAGCACTCCTCGGAGAATGGAAGTCTCAGGTTCTCCACTCCTCCTGGGGAGCTGGATGGAGGCACAGCCTCTGGGCGTAGCGGCACGGGAAGCAGAGCCAGTACACCCCACCTTCCCAGTGGTCGCCCCAGCTCCAAGGATGGCCGCCGTAGTGACACATGTGAGTTTTGTGGCAAGGTCTTCAAAAACTGCAGCAACTTGACAGTGCATCGCCGCAGCCATACTGGCGAAAGGCCGTATAAATGTGAGCTTTGTAGCTACGCCTGTGCTCAAAGCAGTAAGCTAACACGGCACATGAAGACGCATGGACAGACAGGCAAGGACGTTTACAAATGTGAGATATGCCACATGCCTTTCAGCGTCTACAGCACTCTGGAGAAGCACATGAAAAAATGGCACAACGATCGGCCATTGAGCATCGAAATTAAATCGGAGTAA

Function

GO:

id name namespace
GO:2000171 negative regulation of dendrite development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061009-4 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autism spectrum disorder; beta thalassemia; schizophrenia; and sickle cell anemia. Orthologous to human BCL11A (BAF chromatin remodeling complex subunit BCL11A).

Ensembl:

ensembl_id ENSDART00000140827

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062303 lncRNA upstream 217496 6270875 ~ 6273517 (+) False XLOC_031808
TCONS_00062304 lncRNA upstream 217496 6271793 ~ 6273517 (+) False XLOC_031808
TCONS_00064803 lncRNA upstream 404881 6085236 ~ 6086132 (+) True XLOC_031805
TCONS_00064802 lncRNA upstream 509155 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00064801 lncRNA upstream 509654 5938465 ~ 5981359 (+) False XLOC_031804
TCONS_00064804 lncRNA downstream 177397 6718916 ~ 6741408 (+) True XLOC_031811
TCONS_00062311 lncRNA downstream 245119 6786638 ~ 6787082 (+) False XLOC_031812
TCONS_00064805 lncRNA downstream 245119 6786638 ~ 6788943 (+) False XLOC_031812
TCONS_00062312 lncRNA downstream 245516 6787035 ~ 6788943 (+) False XLOC_031812
TCONS_00062313 lncRNA downstream 248140 6789659 ~ 6793176 (+) True XLOC_031812
TCONS_00062301 mRNA upstream 217494 6270686 ~ 6273519 (+) False XLOC_031808
TCONS_00062302 mRNA upstream 217497 6270732 ~ 6273516 (+) False XLOC_031808
TCONS_00062299 mRNA upstream 253424 6215042 ~ 6237589 (+) True XLOC_031806
TCONS_00062295 mRNA upstream 1506770 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062294 mRNA upstream 1506770 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062307 mRNA downstream 120960 6662479 ~ 6666426 (+) True XLOC_031810
TCONS_00062308 mRNA downstream 237595 6779114 ~ 6795988 (+) False XLOC_031812
TCONS_00062309 mRNA downstream 237595 6779114 ~ 6795996 (+) False XLOC_031812
TCONS_00062310 mRNA downstream 239354 6780873 ~ 6796687 (+) False XLOC_031812
TCONS_00062314 mRNA downstream 256001 6797520 ~ 6800387 (+) False XLOC_031813
TCONS_00062305 other upstream 217536 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062300 other upstream 275103 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062297 other upstream 806718 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062276 other upstream 2640771 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 2652785 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062321 other downstream 290527 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 338408 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062341 other downstream 911836 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062343 other downstream 924754 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062345 other downstream 958609 7500128 ~ 7505016 (+) False XLOC_031829

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU142338 True 1358 lncRNA 0.52 2 CI01000024 7029690 ~ 7031113 (-)