RNA id: TCONS_00062345


Basic Information

Item Value
RNA id TCONS_00062345
length 519
RNA type processed_transcript
GC content 0.42
exon number 5
gene id XLOC_031829
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 7466223 ~ 7531427 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAGACAAGATGGAGGTGGATAAAACAGGGGTGAAAAGGTGTGAGAAGTGTGAAGGCCTCTGTCCTAAAGCCTGTGTTGGCACCGGCACCGGCACCGCCTCCAGACAGACAGTAGATTCCCAAAACATCGACAGCTTCATAAACTGCACCAAGATTCAGGGCAGCCTGCACTTCCTTGTCACAGGAATTAAAGGAGACAGTTATAATAACATCAGTGCTCTGGATCCAAAGAAACTTAAGATCTTCAACACTGTCCGAGAGATCACagACATTCTGAGTATTCAATCTTGGCCTGAAGAGCTGGAAGATCTTTCTGTTTTCTCCAATCTAGCAACAATACAGGGAAGAACACTGTATAGAGGAGTGAGCTCTAAGAGGTAGGAttggatttggatttttttttttgctctattttCTCTCTttatctgctttttaaaaataaatactgcaaacTTATTCAAATTTCAAATTTCACAGTTTGCATGATTTGTCATTGCTTCACAATCAGCCCTGTGGTG

Function

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0007399 nervous system development biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0009925 basal plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0038131 neuregulin receptor activity molecular_function
GO:0038132 neuregulin binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030916-3 Predicted to enable neuregulin binding activity; neuregulin receptor activity; and transmembrane receptor protein tyrosine kinase activity. Predicted to be involved in several processes, including positive regulation of cell population proliferation; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in epidermis; fin; glial cell; and heart. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome 2; lung adenocarcinoma; and lung non-small cell carcinoma. Orthologous to human ERBB3 (erb-b2 receptor tyrosine kinase 3).

Ensembl:

ensembl_id ENSDART00000148559

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062339 lncRNA upstream 64428 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00064806 lncRNA upstream 291499 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062325 lncRNA upstream 599445 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00062317 lncRNA upstream 691788 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00062315 lncRNA upstream 699870 6799291 ~ 6800258 (+) True XLOC_031813
TCONS_00062351 lncRNA downstream 145711 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062354 lncRNA downstream 585407 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00064807 lncRNA downstream 759748 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062364 lncRNA downstream 834255 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00064808 lncRNA downstream 945295 8450311 ~ 8453642 (+) True XLOC_031840
TCONS_00062340 mRNA upstream 47569 7444899 ~ 7452559 (+) True XLOC_031827
TCONS_00062338 mRNA upstream 72616 7421898 ~ 7427512 (+) True XLOC_031825
TCONS_00062337 mRNA upstream 84785 7414215 ~ 7415343 (+) True XLOC_031824
TCONS_00062336 mRNA upstream 109670 7322587 ~ 7390458 (+) True XLOC_031823
TCONS_00062335 mRNA upstream 220048 7250824 ~ 7280080 (+) True XLOC_031822
TCONS_00062346 mRNA downstream 2374 7507390 ~ 7511762 (+) True XLOC_031829
TCONS_00062347 mRNA downstream 28585 7533601 ~ 7551140 (+) True XLOC_031830
TCONS_00062349 mRNA downstream 48069 7553085 ~ 7658285 (+) False XLOC_031831
TCONS_00062348 mRNA downstream 48069 7553085 ~ 7658285 (+) False XLOC_031831
TCONS_00062350 mRNA downstream 50598 7555614 ~ 7657019 (+) False XLOC_031831
TCONS_00062343 other upstream 27631 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 46297 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062324 other upstream 620079 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062321 other upstream 667507 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062305 other upstream 1226651 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062355 other downstream 585561 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062362 other downstream 809507 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062371 other downstream 1186392 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 1266460 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 2372697 9877713 ~ 9878219 (+) False XLOC_031862

Expression Profile

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