RNA id: TCONS_00062351


Basic Information

Item Value
RNA id TCONS_00062351
length 509
lncRNA type retained_intron
GC content 0.44
exon number 2
gene id XLOC_031831
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 7553085 ~ 7658285 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ataCAACTAAGATCTGCttgctttgacacattatttaaaatatgtggccaggatattatttatttttgctgggCCATTAAAGCAAATCCTTTGTGTTTAGCCGGgtataagtttaaaatgtcatctttatggtcttaaaaagctcttaaagtcttacatttgacttggtgaaacctgcagaaagccTGGTTTAGGTATTGTGCAGTTTTCATCTGTAATAAAGTCAGATTATTGAACAATGACATGAACAAGcatttgtgcttgtttttgttcaGGGCAGCCCTGTTGGATGAGAAGAGGAGACTGGAGGCTCGTATCGCTCAGCTggaggaagagctggaggaggaACAGAGCAATATGGAGCTCCTGAACGACCGCTTCCGCAAGACCACTATGCAGGTGGACACCCTGAACACAGAGCTGGCAGGAGAGCGCAGCGCTGCACAGAAGAGTGAGAACGCACGTCAGCAGCTCGAGCGCCAGAACAAGGACTTAAAATCCAAGCTGCA

Function

GO:

id name namespace
GO:0021555 midbrain-hindbrain boundary morphogenesis biological_process
GO:0070650 actin filament bundle distribution biological_process
GO:0008360 regulation of cell shape biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-162 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Acts upstream of or within actin filament bundle distribution; midbrain-hindbrain boundary morphogenesis; and regulation of cell shape. Predicted to be part of myosin complex. Is expressed in several structures, including nervous system; neural tube; paraxial mesoderm; swim bladder bud; and tail bud. Orthologous to human MYH10 (myosin heavy chain 10).

Ensembl:

ensembl_id ENSDART00000151635

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062339 lncRNA upstream 215027 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00064806 lncRNA upstream 442098 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062325 lncRNA upstream 750044 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00062317 lncRNA upstream 842387 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00062315 lncRNA upstream 850469 6799291 ~ 6800258 (+) True XLOC_031813
TCONS_00062354 lncRNA downstream 438011 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00064807 lncRNA downstream 612352 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062364 lncRNA downstream 686859 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00064808 lncRNA downstream 797899 8450311 ~ 8453642 (+) True XLOC_031840
TCONS_00062372 lncRNA downstream 1052737 8705149 ~ 8871084 (+) False XLOC_031845
TCONS_00062347 mRNA upstream 99587 7533601 ~ 7551140 (+) True XLOC_031830
TCONS_00062342 mRNA upstream 119300 7466223 ~ 7531427 (+) False XLOC_031829
TCONS_00062344 mRNA upstream 121240 7490154 ~ 7529487 (+) False XLOC_031829
TCONS_00062346 mRNA upstream 138965 7507390 ~ 7511762 (+) True XLOC_031829
TCONS_00062340 mRNA upstream 198168 7444899 ~ 7452559 (+) True XLOC_031827
TCONS_00062352 mRNA downstream 325199 7977611 ~ 8074849 (+) True XLOC_031832
TCONS_00062353 mRNA downstream 427562 8079974 ~ 8093993 (+) False XLOC_031833
TCONS_00062356 mRNA downstream 477131 8129543 ~ 8140958 (+) True XLOC_031834
TCONS_00062357 mRNA downstream 501401 8153813 ~ 8154866 (+) True XLOC_031835
TCONS_00062358 mRNA downstream 519815 8172227 ~ 8180042 (+) False XLOC_031836
TCONS_00062345 other upstream 145711 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062343 other upstream 178230 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 196896 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062324 other upstream 770678 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062321 other upstream 818106 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062355 other downstream 438165 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062362 other downstream 662111 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062371 other downstream 1038996 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 1119064 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 2225301 9877713 ~ 9878219 (+) False XLOC_031862

Expression Profile

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