XLOC_031830 (pa2g4a)


Basic Information

Item Value
gene id XLOC_031830
gene name pa2g4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 7533601 ~ 7551140 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062347
ATATGACGACACCTCTGACGCGGCTGCGTAGTGGGCGTGGTCACGCAATGCGTGGAGGTCGTGGGCGGAGCGGCACGTTCGGTGAGCCGCCTGGTGGTAGCGTGACTGATTACTGCTGTCCGTTCACCGTACAGACTCACAGAGAGCCTCTTCCAGAGCCGGTGCAACGATGTCCGACGACGAGCAGCAAGAGCAGACCATCGCCGAGGACTTGGTCGTGACCAAGTACAAGATGGGCGGTGACATTGCCAACCAGGCGTTGAGGGCGGTCATCGAGGCAGCCAAACCAGGAGTATCAGTTCTCAGCCTCTGCCAGAAAGGAGACGCTTTCATCATGGCAGAGACTGGGAAGATCTTTAAACGGGAAAAGGACATGAAGAAAGGTATTGCGTTCCCCACCTGTGTGTCAGTCAATAACTGTGTCTGCCACTTCTCTCCCCTGAAGAGCGACCCCGACTACATGCTGAAAGATGGAGATTTGGTCAAAATTGATTTAGGAGTTCATGTTGACGGCTTCATCTCTAATGTGGCCCATAGCTTTGTTATTGGAGCTACTAAGGAAGCACCTGTGACAGGAAGGAAAGCTGACGTCATCAAAGCAGCACACCTATGTGCAGAAGCAGCGCTGCGTCTTGTTAAACCAGGCAACCAGAACACTCAAGTAACCGAGGCCTGGAACAAGATTGCCCACTCATTCAAGTGCAATCCAATTGAGGGTATGCTGTCCCATCAACTAAAGCAACATGTGATTGATGGAGAGAAAACCATCATCCAGAATCCTACAGATCAACAAAAGAAGGACCATGAGAAGGCAGAGTTTGAGGTTCATGAAGTGTATGCTGTAGATGTGCTGATCAGCTCAGGAGAGGGGAAGGCTAGAGATGGAGGCCAGAGGACAACCATCTACAAAAGAGACCCCAGCAAGCAGTATGGGCTGAAGATGAAGACCTCTAGAATGTTCTTCAGTGAGGTGGAGAGACGCTTCGATGCCATGCCCTTCACTCTCAGGGCGTTTGAGGATGAAGGAAAAGCTCGTCTTGGAGTGGTGGAGTGTGCCAAACACGAGCTCCTGCAGCCTTTCAGTGTGCTCAATGAGAAAGAAGGTGAATTTGTGGCTCAGTTTAAGTTTACAGTGCTACTGATGGCCAATGGGCCTTTGAGAATCACCAGTGGACCACTTGAAGCAGAACTCTACAAGTCTGAACATGACGTTCAAGATCCTGAACTGAAGTCTCTGATCCAGAGTTCTGCAAGTCGTAAagcacagaagaagaagaaaaagaagGCCTCCAAAACTGCAGAGACTGCAACAGGCCAACCAGCTGAGAATGAAGTTGCAGCCAAATAGAGGCAACTCAAGCCTCTCAagacccccacccccacccctgACGAGCAAAAACTCCCAACATTTCTCTCCGTTTTACCCTCATCACTCATTCGATCACGAGCCACTCTTAAACCTGTGTTAAACATGTCTGCCTCCCCCCATTACGGAGAAACGCCACTCCACTACGAATTTGTATTTTCATAATGAATCTATTTGCCATTTTGAAGCACTCGATTTGCATTTCAACTGGAACGCAAAGCCTTtttcaaaatgttattaaaaaagcTGCGCAATTCTTTTGTAGAGTTGCGTTTTTCACAACCGTTGACTGTTTGAAATGCTTTGTTTGGCCCTAAGGTTAACTTAAAACCGCATTACGTTTGATTAGATTAAGTGGTTCGAGGCCGATAATTCAATTGCAGCTATTTCTCAGGGTTTCAAAGATGAAACAATCTTCTTTATCTGAGAAGTAGGATCGAGAATAGCTTACAGGGGCATTAGAAATCAAATTGAGTATATAGATTTCCTCATTACATTTGTACATCTGAAGACGACTCCTGAATACTGGAGAATTATTTGTTCATATCTTGTTAATCCCGTTCTTCATCTTTTAAAGTGTGGAATAATTTTGTTGGTGCAGGGCTGTTTTTCCAAACAAATCTGACATATTATTAATTCAACTTAGCATTAGAAAGTCTGATTTATCATGGGTTTGCTTTAAAGGTCTGATCTAAAATACATCTGAACTCGCTGAAGCTGAGTTATTACTTCCTCTGGACAAGGACCAACACGTTATCACTTTACTTTTACTGAGCAATAGAGTGTCCGCTTGACTGAATATTCAGATCAAAACTAGGCTCGGACTGGATTGTAAAGCTTTTCAGGCATTATTGTTCAATCCAGTCAGTGCAACAATTCCAGAAGAGGTGATGGGAAGTGGTTCTGTAATATTTGACTTTTTCGCAGGTTTGGTTGAGGCTCAGTAGATCGTCCGAAATGTTGGTTATTGTGACATGCTTACAGAGTGTAAAGGTTTGTGTGGGAGAGGAGAGTGGAGGTTTGGAATCGACACGATCTTGTTTTTGTAGTACAAACCATCATATGGGACTATTTTACaactaatgaaataaaacataacTTTGAATATAA

Function

symbol description
pa2g4a Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pectoral fin; and segmental plate. Orthologous to human PA2G4 (proliferation-associated 2G4).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-161 Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pectoral fin; and segmental plate. Orthologous to human PA2G4 (proliferation-associated 2G4).

Ensembl:

ensembl_id ENSDARG00000039578

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062347 True 2476 mRNA 0.45 13 7533601 7551140

Neighbor

gene id symbol gene type direction distance location
XLOC_031829 erbb3a coding upstream 2174 7466223 ~ 7531427 (+)
XLOC_031828 AL953886.1 coding upstream 79770 7453355 ~ 7453831 (+)
XLOC_031827 arf3b coding upstream 81042 7444899 ~ 7452559 (+)
XLOC_031826 AL953886.2 coding upstream 97901 7429311 ~ 7435700 (+)
XLOC_031825 ccdc65 coding upstream 106089 7421898 ~ 7427512 (+)
XLOC_031831 myh10 coding downstream 1945 7553085 ~ 7658285 (+)
XLOC_031832 palm3 coding downstream 426471 7977611 ~ 8074849 (+)
XLOC_031833 si:ch211-207j7.2 coding downstream 528834 8079974 ~ 8093993 (+)
XLOC_031834 klf1 coding downstream 578403 8129543 ~ 8140958 (+)
XLOC_031835 nfil3-3 coding downstream 602673 8153813 ~ 8154866 (+)
XLOC_031820 NA non-coding upstream 324972 7207593 ~ 7208629 (+)
XLOC_031817 AL929341.1 non-coding upstream 653552 6879927 ~ 6880049 (+)
XLOC_031811 NA non-coding upstream 792193 6718916 ~ 6741408 (+)
XLOC_031837 NA non-coding downstream 713624 8264764 ~ 8271403 (+)
XLOC_031839 NA non-coding downstream 788131 8339271 ~ 8346941 (+)
XLOC_031840 NA non-coding downstream 899171 8450311 ~ 8453642 (+)
XLOC_031844 CU571254.1 non-coding downstream 1140268 8691408 ~ 8691993 (+)
XLOC_031845 CR954285.2 non-coding downstream 1154009 8705149 ~ 8997996 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_04849096_04855992 NA coding CI01000024 null 4848825 ~ 4856309 (-)
bowfin (Amia calva) G51928 LOC108272117,LOC107678215,LOC107581315,LOC107713111,LOC107551923 unknown CM030126.1 CM030126.1 13222320 ~ 13224946 (+)