RNA id: TCONS_00062347


Basic Information

Item Value
RNA id TCONS_00062347
length 2476
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_031830
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 7533601 ~ 7551140 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATGACGACACCTCTGACGCGGCTGCGTAGTGGGCGTGGTCACGCAATGCGTGGAGGTCGTGGGCGGAGCGGCACGTTCGGTGAGCCGCCTGGTGGTAGCGTGACTGATTACTGCTGTCCGTTCACCGTACAGACTCACAGAGAGCCTCTTCCAGAGCCGGTGCAACGATGTCCGACGACGAGCAGCAAGAGCAGACCATCGCCGAGGACTTGGTCGTGACCAAGTACAAGATGGGCGGTGACATTGCCAACCAGGCGTTGAGGGCGGTCATCGAGGCAGCCAAACCAGGAGTATCAGTTCTCAGCCTCTGCCAGAAAGGAGACGCTTTCATCATGGCAGAGACTGGGAAGATCTTTAAACGGGAAAAGGACATGAAGAAAGGTATTGCGTTCCCCACCTGTGTGTCAGTCAATAACTGTGTCTGCCACTTCTCTCCCCTGAAGAGCGACCCCGACTACATGCTGAAAGATGGAGATTTGGTCAAAATTGATTTAGGAGTTCATGTTGACGGCTTCATCTCTAATGTGGCCCATAGCTTTGTTATTGGAGCTACTAAGGAAGCACCTGTGACAGGAAGGAAAGCTGACGTCATCAAAGCAGCACACCTATGTGCAGAAGCAGCGCTGCGTCTTGTTAAACCAGGCAACCAGAACACTCAAGTAACCGAGGCCTGGAACAAGATTGCCCACTCATTCAAGTGCAATCCAATTGAGGGTATGCTGTCCCATCAACTAAAGCAACATGTGATTGATGGAGAGAAAACCATCATCCAGAATCCTACAGATCAACAAAAGAAGGACCATGAGAAGGCAGAGTTTGAGGTTCATGAAGTGTATGCTGTAGATGTGCTGATCAGCTCAGGAGAGGGGAAGGCTAGAGATGGAGGCCAGAGGACAACCATCTACAAAAGAGACCCCAGCAAGCAGTATGGGCTGAAGATGAAGACCTCTAGAATGTTCTTCAGTGAGGTGGAGAGACGCTTCGATGCCATGCCCTTCACTCTCAGGGCGTTTGAGGATGAAGGAAAAGCTCGTCTTGGAGTGGTGGAGTGTGCCAAACACGAGCTCCTGCAGCCTTTCAGTGTGCTCAATGAGAAAGAAGGTGAATTTGTGGCTCAGTTTAAGTTTACAGTGCTACTGATGGCCAATGGGCCTTTGAGAATCACCAGTGGACCACTTGAAGCAGAACTCTACAAGTCTGAACATGACGTTCAAGATCCTGAACTGAAGTCTCTGATCCAGAGTTCTGCAAGTCGTAAagcacagaagaagaagaaaaagaagGCCTCCAAAACTGCAGAGACTGCAACAGGCCAACCAGCTGAGAATGAAGTTGCAGCCAAATAGAGGCAACTCAAGCCTCTCAagacccccacccccacccctgACGAGCAAAAACTCCCAACATTTCTCTCCGTTTTACCCTCATCACTCATTCGATCACGAGCCACTCTTAAACCTGTGTTAAACATGTCTGCCTCCCCCCATTACGGAGAAACGCCACTCCACTACGAATTTGTATTTTCATAATGAATCTATTTGCCATTTTGAAGCACTCGATTTGCATTTCAACTGGAACGCAAAGCCTTtttcaaaatgttattaaaaaagcTGCGCAATTCTTTTGTAGAGTTGCGTTTTTCACAACCGTTGACTGTTTGAAATGCTTTGTTTGGCCCTAAGGTTAACTTAAAACCGCATTACGTTTGATTAGATTAAGTGGTTCGAGGCCGATAATTCAATTGCAGCTATTTCTCAGGGTTTCAAAGATGAAACAATCTTCTTTATCTGAGAAGTAGGATCGAGAATAGCTTACAGGGGCATTAGAAATCAAATTGAGTATATAGATTTCCTCATTACATTTGTACATCTGAAGACGACTCCTGAATACTGGAGAATTATTTGTTCATATCTTGTTAATCCCGTTCTTCATCTTTTAAAGTGTGGAATAATTTTGTTGGTGCAGGGCTGTTTTTCCAAACAAATCTGACATATTATTAATTCAACTTAGCATTAGAAAGTCTGATTTATCATGGGTTTGCTTTAAAGGTCTGATCTAAAATACATCTGAACTCGCTGAAGCTGAGTTATTACTTCCTCTGGACAAGGACCAACACGTTATCACTTTACTTTTACTGAGCAATAGAGTGTCCGCTTGACTGAATATTCAGATCAAAACTAGGCTCGGACTGGATTGTAAAGCTTTTCAGGCATTATTGTTCAATCCAGTCAGTGCAACAATTCCAGAAGAGGTGATGGGAAGTGGTTCTGTAATATTTGACTTTTTCGCAGGTTTGGTTGAGGCTCAGTAGATCGTCCGAAATGTTGGTTATTGTGACATGCTTACAGAGTGTAAAGGTTTGTGTGGGAGAGGAGAGTGGAGGTTTGGAATCGACACGATCTTGTTTTTGTAGTACAAACCATCATATGGGACTATTTTACaactaatgaaataaaacataacTTTGAATATAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-161 Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pectoral fin; and segmental plate. Orthologous to human PA2G4 (proliferation-associated 2G4).

Ensembl:

ensembl_id ENSDART00000057823

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062339 lncRNA upstream 97901 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00064806 lncRNA upstream 324972 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062325 lncRNA upstream 632918 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00062317 lncRNA upstream 725261 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00062315 lncRNA upstream 733343 6799291 ~ 6800258 (+) True XLOC_031813
TCONS_00062351 lncRNA downstream 99587 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062354 lncRNA downstream 539283 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00064807 lncRNA downstream 713624 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062364 lncRNA downstream 788131 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00064808 lncRNA downstream 899171 8450311 ~ 8453642 (+) True XLOC_031840
TCONS_00062342 mRNA upstream 2174 7466223 ~ 7531427 (+) False XLOC_031829
TCONS_00062344 mRNA upstream 4114 7490154 ~ 7529487 (+) False XLOC_031829
TCONS_00062346 mRNA upstream 21839 7507390 ~ 7511762 (+) True XLOC_031829
TCONS_00062340 mRNA upstream 81042 7444899 ~ 7452559 (+) True XLOC_031827
TCONS_00062338 mRNA upstream 106089 7421898 ~ 7427512 (+) True XLOC_031825
TCONS_00062349 mRNA downstream 1945 7553085 ~ 7658285 (+) False XLOC_031831
TCONS_00062348 mRNA downstream 1945 7553085 ~ 7658285 (+) False XLOC_031831
TCONS_00062350 mRNA downstream 4474 7555614 ~ 7657019 (+) False XLOC_031831
TCONS_00062352 mRNA downstream 426471 7977611 ~ 8074849 (+) True XLOC_031832
TCONS_00062353 mRNA downstream 528834 8079974 ~ 8093993 (+) False XLOC_031833
TCONS_00062345 other upstream 28585 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062343 other upstream 61104 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 79770 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062324 other upstream 653552 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062321 other upstream 700980 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062355 other downstream 539437 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062362 other downstream 763383 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062371 other downstream 1140268 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 1220336 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 2326573 9877713 ~ 9878219 (+) False XLOC_031862

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_04849096_04855992.mRNA True 1128 mRNA 0.46 5 CI01000024 4848825 ~ 4856309 (-)
eurasian perch (Perca fluviatilis) TU64968 False 1402 lncRNA 0.38 3 NC_053116.1 10623891 ~ 10703381 (+)
bowfin (Amia calva) TU64968 True 475 TUCP 0.63 3 CM030126.1 13222320 ~ 13224946 (+)