RNA id: TCONS_00062354


Basic Information

Item Value
RNA id TCONS_00062354
length 579
lncRNA type sense_over
GC content 0.36
exon number 2
gene id XLOC_031833
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8079974 ~ 8093993 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCGTCTTCATATCTCCACGCGCGACGTCAGAAAACCCTAAAGATTTCAAGGCAGCGAAATCCATTACTTGAGCGCTGGGAGTCTGGGATGGTGAACGGCCATGTTGAAGACTGAAACACAAATCCCAAACAAGACAGTAAAACACAGCAGATGAACAAATGAAATCTCTCCGACCTTTAAGAAGAACCCACCATGTGCCATTATTGGTGGATAAAGAGCATCAGTTGCCTCACAAAGACACTGCAATAGTGAGAAGTCCAGCACACTAGAAACACTGGTATAATAATACTCAATGAGCCAGGTTGTTGTTATTGGAAGTAGGTAGGTATGACTGTTGGGCAGTGTTGAATGTGTTAAATGATTTCAGTGTCATATTGAATGTATTTATAATCAAAAAAACATAGCTGCTCATTTCGTAGTAACAAAACAgtcaataataatgtaaaattagaTAAGGATTgtatttaaatgaacatttaagaTTTAGTTACTGATTAGACAAGCTAAATCAAACAGCCAGGAAGCGGAATTATGCATAATATAAAAATggcataattaataaaaatgttttatcagT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062351 lncRNA upstream 438011 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062339 lncRNA upstream 654723 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00064806 lncRNA upstream 881794 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062325 lncRNA upstream 1189740 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00062317 lncRNA upstream 1282083 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00064807 lncRNA downstream 170965 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062364 lncRNA downstream 245472 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00064808 lncRNA downstream 356512 8450311 ~ 8453642 (+) True XLOC_031840
TCONS_00062372 lncRNA downstream 611350 8705149 ~ 8871084 (+) False XLOC_031845
TCONS_00064809 lncRNA downstream 614989 8708788 ~ 8741728 (+) False XLOC_031845
TCONS_00062352 mRNA upstream 15574 7977611 ~ 8074849 (+) True XLOC_031832
TCONS_00062349 mRNA upstream 432138 7553085 ~ 7658285 (+) False XLOC_031831
TCONS_00062348 mRNA upstream 432138 7553085 ~ 7658285 (+) False XLOC_031831
TCONS_00062350 mRNA upstream 433404 7555614 ~ 7657019 (+) False XLOC_031831
TCONS_00062347 mRNA upstream 539283 7533601 ~ 7551140 (+) True XLOC_031830
TCONS_00062356 mRNA downstream 35744 8129543 ~ 8140958 (+) True XLOC_031834
TCONS_00062357 mRNA downstream 60014 8153813 ~ 8154866 (+) True XLOC_031835
TCONS_00062358 mRNA downstream 78428 8172227 ~ 8180042 (+) False XLOC_031836
TCONS_00062359 mRNA downstream 82687 8176486 ~ 8179934 (+) True XLOC_031836
TCONS_00062360 mRNA downstream 220652 8314451 ~ 8328453 (+) False XLOC_031838
TCONS_00062345 other upstream 585407 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062343 other upstream 617926 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 636592 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062324 other upstream 1210374 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062321 other upstream 1257802 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062362 other downstream 220724 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062371 other downstream 597609 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 677677 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 1783914 9877713 ~ 9878219 (+) False XLOC_031862
TCONS_00062404 other downstream 1807325 9901124 ~ 9908762 (+) False XLOC_031864

Expression Profile

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