RNA id: TCONS_00062352


Basic Information

Item Value
RNA id TCONS_00062352
length 3452
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_031832
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 7977611 ~ 8074849 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCGGCGTGCATGAAACACATCAAGCGCGTCGAGCTGGGACGAGCGCAAAGTTTTCACTGGATGATTTCGACCCTCATTACTTGTACTGTATGTCAAAACGACGCTTTTTTTATTTCGCTCGGGAGCAGTTGCGAACTAACCGGTTTGAAGCGTTGAACTGAAGTCATAAAAATAGCGCCTTTGCTGTCGGCGAAGCTCCTCAGGTGGTTTTCTCCTCCAGCGGGACAAGAAGACGCAGCCAAAGTTGCTGATTTCGTCAATTCGGCGCAGGTCTGCAAACAAATGTACATTTGAGCCATATTAGTTCCGCTTTCCGTGTGgtttgtgtattttaaaacacttcattACCAATTCTCAAAAAGGACAACCGGGCCAACTCAACAGGTCCAGGATGGAGCATGAAGCAGAGAAGTACCAGCAGCGACTGCAGGCTATAGCGGAGAAACGGCGGGTACAGGAGGAACAAGAGCGAGCCAGAAGAGAGATGGAGGACGAGAGACTGAGACTACAGCAGCTTaagAGAAAGTCCCTGCGAGACCAGTGGCTGATGGAAGGACCTCCAACATCTCCTGACAGTGCAGGACCCCGATCTCCCCTCTGGGGCTCCAAAGCTCAGGAGATTGAGACACACATTACCAAATTACAGGCGACATCTGAGCATTTGGCAGAGGAAGAAGTCAAACTGAAGAAGCTGATAGACGGCACTTCTGCTCAATCTGGCACAGACGCGCAAACACACCATAAGGAGGAGCCGCTGCTGGAGTGTGTGGAAACAgCAGTTGCTGAGACGACACCTAATGGACCCATTGTGGAGAATGGAAAAGAGGAAAAGCAAGatGATTCTGTGCATGCTGTGAATCACGAGGAACACACGGACGCAAAGACAGAAACAGACACTGAAACATCTTCAGCCGTTACTAATGGAAATGTGGAAGTCAACTCTTTTGTTAACGGCTTCTCCAGTCATCCCTCTGAAGGAATAGGAGCTGCCGGCGTAACCATGACCTTCCTTGGGTTCAAAGAAGCAGAGCCCGGACAGGGAgtagatgaggatgatgatggagGAGCCATAATCCGAGCAGAAAGAGTCATCATCACTGATGAAGGGGAGGAAATCCCAGAGGAAGAACTGACAGGTGATAAAAACCAAGACGGAAGCACCGAATCAATGGCTTCAAAAGTAGAAACCGAAGACGAACTGGAGAAAGCTGAAGATATGTCCGCTGAAGAGATTGTTTTGGATGTGGAAGGTGAAAAGGAGCAGGAATCGATTGATACGCAACTCGAAAATATAACCTTAGATACCTCTGCTGATTTGAATGAGGAAGGTGAAACCGAAAAGGAGCATGAATCTGCTGATACACAAGTGCAAAGCGTAGATACAGAGGCTATGCAGGTTTCAGTGAATTTCACAACACAACCGTCTCCAGTAACCAAACCAAAAGTGGAAATAAACGCAACAGAATCAAAAATCGAAGAAGCTCTAGCCTCCACACGAATCTCCATCAGCCAGTTCCAAGAAGTTCCTCTGGATGAGTCCAATGTAGGAACCGAAAAACAGCAGGTCGAACAAGAGCCTCTGCTGATCTCCAAAACAGCGGCCCAGCTGGACACCAGCCTCCCGAACCGAGCAGAGGAAACAGGAGGACCAAAGCGAAAAACCTGCCAGTGCTGTTCCATCATGTGAACGATCTGCTGAAGGTTGTTTGCTTCATGCCTGTTACTTCGTATCAAGACATTCTGATCCTCAGCTGTTTCAATGCTACTTTAAAGCGGCGTCAGAGTGTTTATAATGTACTGACGCATCCCAGACTCACTTTGCCCTTAGTGTGTTGAAATATGATTTATAAGAAGATGCACACTGCCTTGCTGGAAAGGACTGGAACGTGTGTTTGTTGTTGGATAATGTGTTTCATTTCCCAGCCTCTGGTGTCTGATTAAGATGCTGTTTTTATGCTTGGCGACTCTTGAGTGTTTGGCTGACGACCCACAGAGGCCTTGACGGTTTTAACACTAGcatatcaaaatattttgtttttataaatgccGTGGGATTCAACCCACGGGGGTAATTAATAGGTCCTACAATAGTTGTGGGGTACTCTGTTATAAACCACTTGTGTGCCTTGATTATGAATCAAAACAAAGAGATGGAATGGTTGCCTGTGATTTTATaagtgttgattttttttgttttgtattgctgATTGAGTTGAGTTTTGATTGCTTTTATTGCTGTTACAGTGCCTCCAACTGCCTGACAGAAGTGTATTTAAACTTTATAGGCATAGTTCACTTAGAAATTTAAAAAACTTCATATTTTGATGAAAAGCAAAGGGGTTTAAAACtacttatgaaaaaataaaatctatacagatttaaaaaaacaggacaaaaaattaatcaatcaagagaaaaaaaatcaagtagtTTCAcagatttatgtttttttcaggGATGCACTGATCCcgatacttggatcggatatcTGTTACGTtactgcatatttttgctggatcggcgATCGACCAGCAGGTACcgatccaaatccgatcttgcaTGTGTGCTATATTCTGTGCAATTTATAAAAGCCATGAAGGCAGCCTAGAAATACAATATCTTAAATGctctgaagccattctatagtttaatgtgaagtacagacTAATTTTCAggtggttaaattcatgttcagttcagcGCTTCCCACTGCCGCGCCTGTCAgtcattctccattcattcacaatttaaACTTATGACAACTCCAAAAAATTCTCCAAGACAATTTGTTCCTGTTATTATAAGcaatcagtggagaaatgcatttggTTTTGCATTAAATGGTCTCATTCTGACCTGAAACAAGGAGATCATtgcggtttctaaatcatgttgctCTTTGTCTGTTAGACCAGCAGATTGCATTTGCAACACTGAGGGTtcttacctgctcttcacacacaaagtaggcctacctgaaaatTTACactagaaaaggctcaataatacattggacagatcctaaACGCACTGATTTCTCCCCCTTGTGCTGCTGTTTTGAAAGTGTCAGCAGATACCAGAGGGCTGCGCGCTGTGTCTCAGTAATGCATCAAACGCGTCATTCATGCACCGGCTGCGCAGACGCGATGTGCACATTCCGTAAGATTATTCTTTAATATTAaaagtttctgttctctcatccttctgATTGAGTTTATTCTTTATACGTTCAGTGCTgtgaatagtttgtaaagcctggctcattgtggtcaaagtagctAGTAATAAATGTGAAACTGACGGGCGCAAtatggattgtcattaacagaaaatattttatttaacttagcCTAATATAGGCTATTCTGATACTAaatatttcactgtaattttatttatattaatattttatttaacagacaaGTTTGTGTTTTCATTAGGGTCAATAGTG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-74 Orthologous to human PALM3 (paralemmin 3).

Ensembl:

ensembl_id ENSDART00000112290

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062351 lncRNA upstream 325199 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062339 lncRNA upstream 541911 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00064806 lncRNA upstream 768982 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062325 lncRNA upstream 1076928 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00062317 lncRNA upstream 1169271 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00062354 lncRNA downstream 15574 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00064807 lncRNA downstream 189915 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062364 lncRNA downstream 264422 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00064808 lncRNA downstream 375462 8450311 ~ 8453642 (+) True XLOC_031840
TCONS_00062372 lncRNA downstream 630300 8705149 ~ 8871084 (+) False XLOC_031845
TCONS_00062349 mRNA upstream 319326 7553085 ~ 7658285 (+) False XLOC_031831
TCONS_00062348 mRNA upstream 319326 7553085 ~ 7658285 (+) False XLOC_031831
TCONS_00062350 mRNA upstream 320592 7555614 ~ 7657019 (+) False XLOC_031831
TCONS_00062347 mRNA upstream 426471 7533601 ~ 7551140 (+) True XLOC_031830
TCONS_00062342 mRNA upstream 446184 7466223 ~ 7531427 (+) False XLOC_031829
TCONS_00062353 mRNA downstream 5125 8079974 ~ 8093993 (+) False XLOC_031833
TCONS_00062356 mRNA downstream 54694 8129543 ~ 8140958 (+) True XLOC_031834
TCONS_00062357 mRNA downstream 78964 8153813 ~ 8154866 (+) True XLOC_031835
TCONS_00062358 mRNA downstream 97378 8172227 ~ 8180042 (+) False XLOC_031836
TCONS_00062359 mRNA downstream 101637 8176486 ~ 8179934 (+) True XLOC_031836
TCONS_00062345 other upstream 472595 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062343 other upstream 505114 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 523780 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062324 other upstream 1097562 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062321 other upstream 1144990 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062355 other downstream 15728 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062362 other downstream 239674 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062371 other downstream 616559 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 696627 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 1802864 9877713 ~ 9878219 (+) False XLOC_031862

Expression Profile

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