RNA id: CI01000024_04849096_04855992.mRNA


Basic Information

Item Value
RNA id CI01000024_04849096_04855992.mRNA
length 1128
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01000024_04849096_04855992
representative True

Chromosome Information

Item Value
chromosome id CI01000024
NCBI id null
chromosome length 8644187
location 4848825 ~ 4856309 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGATAGATAGATAGATAGAGCGTTAGCTGAATGATTAACAACTATCAGCAAAAAAAAAGTTTGTTTTTTTCCCCCCTTTTTTTACTATTGTGTCCTTTTTGGAAAATATCCAAAAGCCTCGGTTGTTTTTTGGCGCCATCGTATATGACGACACCTCTGATGTGGCTGCGTAGTAGGCGTGGCTACGCTGTGCGTGGAGGCCGTGGGCGGAGCGTGACGGTCGGCGAGCCGCTTGTGCCTGTGGTAGCGTGACTGATTTCTGCTGTCCGCTCAACGTATTGACAGAGAGAGAGACGTTTGAGAGCCGGTGCAACGATGTCCGACGACGAACAGCAAGAGCAGACCATCGCCGAGGACTTGGTCGTGACCAAATACAAGATGGGCGGTGACATAGCCAACCAGGCGTTGAGGGTGGTCATCGAGGCAGCTAAACCAGGAATATCAGTTCTCAGCCTCTGTGAGAAAGGAGATGCTTTCATCATGGCAGAGACTGGGAAGATCTTTAAGAAGGAGAAAGACATGAAGAAAGGCATTGCGTTCCCCACCAGTGTGTCAGTCAATAACTGTGTCTGCCACTTCTCTCCCCTGAAGAGCGACCCAGACTACACGCTGAAAGATGGAGATTTGGTCAAAATTGATTTAGGAGTACATGTTGATGGCTTCATCTCCAACGTGGCCCATAGCTTTGTTATCGGAGCTACTAAGGATGCACCTGTGACAGGAAGGAAAGCTGATGTCATCAAAGCAGCACACCTGTGTGCAGAAGCAGCTTTGCGTCTTGTCAAACCAGGCAACCAGGTTAATACATACTTCACACAGTTAAAGTGGAAAATAGATAAGGTTGAAACTCTTTAGAACTCTTTTGAAACTCTTTAACTCTGAGACCATTAGCTGCCAGCTCCTCAACACAAGATTGTAGAGAATAGGCAGTATGTCTTATGTTTAAATATAGCAATGGTCTGTTTCTCATGCAATGTCTTTTATCTTCTCCATCCGCCCCATTTACCTTTGAAGAACACTCAAGTAACTGAGGCCTGGAACAAGATTGCCCAGTCATTCAAGTGCAATCCAATTGAGGGTGAGTTATGGCTATTATTTCATTTGGGACAGCTCAACCACAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU140840 lncRNA downstream 80993 4767230 ~ 4767832 (-) True G124035
TU140837 lncRNA downstream 83823 4764718 ~ 4765002 (-) True G124032
TU140509 lncRNA downstream 109226 4737303 ~ 4739599 (-) False G123737
TU140507 lncRNA downstream 109226 4738029 ~ 4739599 (-) True G123737
TU140558 lncRNA downstream 131796 4715864 ~ 4717029 (-) True G123783
TU140532 lncRNA upstream 40235 4896544 ~ 4898680 (-) True G123757
TU140847 lncRNA upstream 50246 4906555 ~ 4906840 (-) True G124042
TU140849 lncRNA upstream 54421 4910730 ~ 4910943 (-) True G124044
TU140523 lncRNA upstream 58031 4914340 ~ 4919052 (-) True G123748
TU140910 lncRNA upstream 258054 5114363 ~ 5114584 (-) True G124099
CI01000024_04775678_04783105.mRNA mRNA downstream 65720 4774983 ~ 4783105 (-) True CI01000024_04775678_04783105
CI01000024_04596928_04606949.mRNA mRNA downstream 241876 4596755 ~ 4606949 (-) True CI01000024_04596928_04606949
CI01000024_04584906_04590559.mRNA mRNA downstream 258104 4584454 ~ 4590721 (-) True CI01000024_04584906_04590559
CI01000024_04565630_04567525.mRNA mRNA downstream 281191 4565222 ~ 4567634 (-) True CI01000024_04565630_04567525
CI01000024_04555804_04556790.mRNA mRNA downstream 291677 4555514 ~ 4557148 (-) True CI01000024_04555804_04556790
CI01000024_04860251_04882047.mRNA mRNA upstream 3793 4860102 ~ 4882804 (-) True CI01000024_04860251_04882047
CI01000024_04890922_04892119.mRNA mRNA upstream 34467 4890776 ~ 4892154 (-) True CI01000024_04890922_04892119
CI01000024_04900693_04903891.mRNA mRNA upstream 43541 4899850 ~ 4903966 (-) True CI01000024_04900693_04903891
CI01000024_04921413_04932000.mRNA mRNA upstream 64486 4920795 ~ 4932000 (-) True CI01000024_04921413_04932000
CI01000024_04934952_04935671.mRNA mRNA upstream 78559 4934868 ~ 4935840 (-) True CI01000024_04934952_04935671
TU140468 other downstream 906901 3936042 ~ 3937057 (-) True G123701
TU139935 other downstream 2293789 2547460 ~ 2555036 (-) True G123233
TU137850 other downstream 4021974 823733 ~ 826851 (-) True G121380
TU142441 other upstream 2500928 7357237 ~ 7357595 (-) False G125457
TU142437 other upstream 2501396 7357705 ~ 7358104 (-) False G125457
TU142439 other upstream 2501445 7357754 ~ 7358104 (-) True G125457
TU142839 other upstream 3119358 7975667 ~ 7976047 (-) False G125798

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062347 True 2476 mRNA 0.45 13 NC_007117.7 7533601 ~ 7551140 (+)